Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 1.6e-88 329.3 163 100.0
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 2.7e-75 285.4 160 85.0
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.3e-74 282.3 161 86.3
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.2e-72 275.8 159 86.2
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.2e-72 275.8 159 86.2
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 4.8e-72 274.6 161 83.2
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 4.8e-72 274.6 161 83.2
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 6.3e-72 274.2 158 85.4
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 6.3e-72 274.2 159 85.5
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 3.1e-71 271.9 159 83.0
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 3.1e-71 271.9 158 82.3
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 1.2e-70 270.0 158 84.8
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 1.0e-69 266.9 157 82.2
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.3e-69 266.5 159 81.1
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 1.7e-69 266.2 158 82.3
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 2.2e-69 265.8 158 79.1
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 8.5e-69 263.8 159 81.1
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 1.1e-68 263.5 158 80.4
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 1.4e-68 263.1 158 83.5
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 1.4e-68 263.1 159 81.1
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.9e-68 262.7 158 82.3
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 3.2e-68 261.9 158 82.3
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 4.2e-68 261.5 158 80.4
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 4.2e-68 261.5 159 79.2
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 4.2e-68 261.5 158 81.0
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 4.2e-68 261.5 158 79.1
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 5.5e-68 261.2 158 79.7
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 5.5e-68 261.2 157 81.5
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 5.5e-68 261.2 161 76.4
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 7.2e-68 260.8 155 80.6
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 7.2e-68 260.8 155 80.6
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 7.2e-68 260.8 158 81.6
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 9.4e-68 260.4 155 80.6
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 9.4e-68 260.4 158 81.6
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 3.6e-67 258.5 160 78.8
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 3.6e-67 258.5 159 77.4
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 4.6e-67 258.1 158 78.5
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 4.6e-67 258.1 158 77.2
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 4.6e-67 258.1 158 76.6
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 4.6e-67 258.1 158 82.3
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 4.6e-67 258.1 155 80.6
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 6.1e-67 257.7 159 81.8
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 6.1e-67 257.7 162 76.5
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 7.9e-67 257.3 158 78.5
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 1.0e-66 256.9 155 79.4
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 1.4e-66 256.5 161 77.6
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 1.8e-66 256.1 159 79.2
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 1.8e-66 256.1 159 79.2
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 1.8e-66 256.1 159 79.9
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 3.0e-66 255.4 156 79.5
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 3.9e-66 255.0 154 79.9
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 6.7e-66 254.2 162 77.8
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 6.7e-66 254.2 158 76.6
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 1.1e-65 253.4 158 76.6
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 1.1e-65 253.4 159 78.0
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 1.5e-65 253.1 159 76.7
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 3.3e-65 251.9 161 73.9
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 4.3e-65 251.5 157 78.3
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 5.7e-65 251.1 153 77.8
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 5.7e-65 251.1 141 85.8
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 5.7e-65 251.1 162 75.3
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 7.4e-65 250.8 160 76.9
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 7.4e-65 250.8 159 75.5
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 9.7e-65 250.4 161 72.0
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 9.7e-65 250.4 159 77.4
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.3e-64 250.0 156 77.6
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 1.3e-64 250.0 158 73.4
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 1.7e-64 249.6 157 76.4
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 2.8e-64 248.8 157 75.2
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 3.7e-64 248.4 141 83.7
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 3.7e-64 248.4 156 77.6
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 3.7e-64 248.4 158 75.9
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 3.7e-64 248.4 159 74.8
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 4.8e-64 248.1 159 74.2
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 4.8e-64 248.1 141 85.1
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 4.8e-64 248.1 161 75.8
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 8.2e-64 247.3 164 75.6
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.1e-63 246.9 157 75.8
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 1.1e-63 246.9 155 76.1
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 1.8e-63 246.1 157 76.4
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 1.8e-63 246.1 155 75.5
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 2.4e-63 245.7 159 74.8
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 3.1e-63 245.4 185 69.2
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 3.1e-63 245.4 157 75.8
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 5.3e-63 244.6 141 82.3
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 2.0e-62 242.7 181 69.6
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 2.6e-62 242.3 138 81.2
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 3.4e-62 241.9 156 76.3
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 4.5e-62 241.5 160 72.5
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 5.9e-62 241.1 157 74.5
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 7.7e-62 240.7 176 68.2
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 1.7e-61 239.6 137 81.0
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 2.2e-61 239.2 159 75.5
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 3.8e-61 238.4 155 76.1
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 6.5e-61 237.7 141 79.4
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 6.5e-61 237.7 160 75.0
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 1.4e-60 236.5 137 78.8
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 3.2e-60 235.3 165 73.9
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 1.2e-59 233.4 153 72.5
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 2.7e-59 232.3 161 72.0
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 4.7e-59 231.5 159 73.0
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 2.3e-58 229.2 159 70.4
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 2.6e-57 225.7 161 70.2
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 2.6e-57 225.7 161 72.0
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 7.4e-57 224.2 161 71.4
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 3.7e-56 221.9 161 68.9
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 3.7e-56 221.9 161 68.9
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 8.2e-56 220.7 163 66.3
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 1.4e-55 219.9 161 70.8
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 1.8e-55 219.5 161 68.9
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 1.8e-55 219.5 161 68.9
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 3.1e-55 218.8 161 68.3
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 4.1e-55 218.4 141 73.8
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 7.0e-55 217.6 141 73.8
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 9.1e-55 217.2 141 73.0
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 2.6e-54 215.7 206 56.8
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 4.5e-54 214.9 161 69.6
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 4.2e-52 208.4 159 66.7
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 7.2e-52 207.6 132 74.2
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 4.7e-51 204.9 158 69.0
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 1.4e-47 193.4 154 59.7
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 3.5e-46 188.7 129 70.5
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 2.5e-44 182.6 118 70.3
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 2.1e-43 179.5 111 76.6
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 1.7e-37 159.8 124 65.3
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 1.5e-36 156.8 93 79.6
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 1.8e-34 149.8 93 75.3
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 4.0e-34 148.7 137 54.0
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 1.2e-33 147.1 139 51.1
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 4.8e-32 141.7 99 68.7
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 3.5e-30 135.6 87 73.6
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 6.6e-29 131.3 158 44.3
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 8.9e-26 120.9 77 75.3
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 1.6e-22 110.2 111 50.5
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 8.6e-21 104.4 127 44.1
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 6.0e-14 81.6 48 79.2
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 3.0e-13 79.3 50 78.0


User provided reference genes

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