Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-73 279.6 133 100.0
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 8.5e-43 177.2 109 83.5
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.7e-41 172.2 109 80.7
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 5.3e-37 157.9 107 78.5
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 9.4e-34 147.1 81 90.1
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 6.3e-30 134.4 82 79.3
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-28 130.2 92 69.6
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-28 130.2 92 69.6
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 5.9e-28 127.9 65 93.8
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 2.2e-27 125.9 82 73.2
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 2.9e-27 125.6 82 73.2
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 2.5e-26 122.5 82 72.0
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 4.2e-26 121.7 82 70.7
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.1e-25 119.4 83 69.9
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 4.7e-25 118.2 83 67.5
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 1.8e-24 116.3 82 65.9
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 2.3e-24 115.9 82 68.3
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.0e-24 115.5 82 69.5
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 5.2e-24 114.8 82 68.3
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 8.8e-24 114.0 93 62.4
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.6e-23 112.5 87 66.7
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 3.4e-23 112.1 82 68.3
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 3.4e-23 112.1 82 63.4
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 4.4e-23 111.7 82 63.4
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 7.5e-23 110.9 82 65.9
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 9.8e-23 110.5 83 66.3
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 1.3e-22 110.2 81 66.7
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 1.3e-22 110.2 86 64.0
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 1.7e-22 109.8 82 65.9
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.7e-22 109.8 83 66.3
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 1.7e-22 109.8 85 63.5
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.7e-22 109.8 86 65.1
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.8e-22 109.0 82 64.6
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 3.7e-22 108.6 86 60.5
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 6.3e-22 107.8 83 63.9
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 6.3e-22 107.8 83 63.9
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.3e-22 107.5 82 67.1
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 1.1e-21 107.1 83 63.9
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.4e-21 106.7 89 60.7
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.8e-21 106.3 58 93.1
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 2.4e-21 105.9 87 59.8
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 2.4e-21 105.9 87 59.8
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 4.1e-21 105.1 59 91.5
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 5.4e-21 104.8 85 58.8
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 5.4e-21 104.8 82 63.4
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 7.0e-21 104.4 83 62.7
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 9.1e-21 104.0 81 60.5
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 9.1e-21 104.0 82 59.8
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 1.2e-20 103.6 82 61.0
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.0e-20 102.8 90 63.3
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 2.0e-20 102.8 85 58.8
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 2.7e-20 102.4 82 63.4
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.7e-20 102.4 82 63.4
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.7e-20 102.4 82 63.4
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.7e-20 102.4 82 63.4
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.7e-20 102.4 82 63.4
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.7e-20 102.4 82 63.4
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 2.7e-20 102.4 85 57.6
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 2.7e-20 102.4 86 57.0
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 2.7e-20 102.4 80 63.8
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 2.7e-20 102.4 82 61.0
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 3.5e-20 102.1 85 58.8
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 3.5e-20 102.1 79 65.8
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 3.5e-20 102.1 92 55.4
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 3.5e-20 102.1 82 61.0
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 3.5e-20 102.1 84 60.7
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 4.5e-20 101.7 81 59.3
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 4.5e-20 101.7 83 61.4
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 4.5e-20 101.7 82 62.2
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 5.9e-20 101.3 83 62.7
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 7.7e-20 100.9 82 61.0
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 7.7e-20 100.9 82 61.0
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.0e-19 100.5 89 59.6
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.0e-19 100.5 83 60.2
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 1.3e-19 100.1 86 58.1
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.3e-19 100.1 81 59.3
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-19 100.1 56 92.9
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.3e-19 99.4 81 56.8
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.3e-19 99.4 82 62.2
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.9e-19 99.0 78 62.8
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 3.8e-19 98.6 81 60.5
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 3.8e-19 98.6 83 59.0
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 3.8e-19 98.6 83 61.4
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 6.6e-19 97.8 81 54.3
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 6.6e-19 97.8 81 58.0
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 6.6e-19 97.8 80 56.2
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 8.6e-19 97.4 80 56.2
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 8.6e-19 97.4 82 61.0
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 1.1e-18 97.1 82 59.8
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.1e-18 97.1 79 57.0
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.5e-18 96.7 85 56.5
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.5e-18 96.7 80 60.0
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 2.5e-18 95.9 81 60.5
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 3.3e-18 95.5 85 57.6
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 4.2e-18 95.1 82 56.1
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 4.2e-18 95.1 82 57.3
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 5.5e-18 94.7 92 55.4
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 7.2e-18 94.4 85 56.5
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 9.5e-18 94.0 86 54.7
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 9.5e-18 94.0 86 54.7
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.6e-17 93.2 82 54.9
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 2.1e-17 92.8 86 53.5
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.1e-17 92.8 85 54.1
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 2.8e-17 92.4 87 51.7
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 2.8e-17 92.4 85 54.1
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 6.1e-17 91.3 85 54.1
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 8.0e-17 90.9 82 53.7
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 8.0e-17 90.9 81 54.3
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.0e-16 90.5 90 51.1
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 1.0e-16 90.5 86 50.0
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 1.0e-16 90.5 78 59.0
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.4e-16 90.1 81 54.3
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 1.4e-16 90.1 81 54.3
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 3.0e-16 89.0 82 52.4
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 3.0e-16 89.0 85 56.5
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 3.0e-16 89.0 85 56.5
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 4.0e-16 88.6 82 52.4
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 4.0e-16 88.6 84 54.8
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 5.2e-16 88.2 81 53.1
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 6.8e-16 87.8 81 51.9
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 6.8e-16 87.8 82 50.0
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 6.8e-16 87.8 80 53.8
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 2.0e-15 86.3 81 53.1
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 2.0e-15 86.3 82 53.7
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 4.4e-15 85.1 94 51.1
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 5.7e-15 84.7 90 48.9
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 4.9e-14 81.6 82 52.4
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 3.2e-13 79.0 91 51.6
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 7.0e-13 77.8 87 49.4
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 9.2e-13 77.4 92 46.7
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.9e-11 72.4 60 60.0
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 1.1e-10 70.5 75 45.3
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.5e-10 70.1 90 40.0
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 5.6e-10 68.2 75 44.0
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 5.2e-08 61.6 75 41.3
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 2.6e-07 59.3 86 37.2
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 3.7e-06 55.5 83 37.3


User provided reference genes

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