Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 7.0e-81 303.9 155 100.0
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 9.5e-62 240.4 155 83.9
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 6.8e-60 234.2 149 85.2
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 7.8e-40 167.5 154 64.3
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-39 166.8 143 66.4
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.3e-39 166.0 107 81.3
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.1e-36 157.1 155 60.0
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.1e-36 157.1 155 60.0
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 1.8e-36 156.4 155 60.0
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.8e-36 156.4 154 61.0
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.3e-34 150.2 155 58.1
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 1.7e-34 149.8 155 56.1
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 2.2e-34 149.4 155 55.5
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 6.4e-34 147.9 155 57.4
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.4e-33 146.7 81 90.1
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 3.2e-33 145.6 155 55.5
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 7.1e-33 144.4 155 55.5
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 9.3e-33 144.1 155 54.8
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 9.3e-33 144.1 155 56.1
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 2.7e-32 142.5 155 53.5
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 7.9e-32 141.0 155 54.2
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.3e-31 140.2 155 56.1
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.3e-31 140.2 155 53.5
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.8e-31 139.8 155 54.8
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.8e-31 139.8 155 54.8
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 3.0e-31 139.0 155 53.5
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 3.9e-31 138.7 155 54.2
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 3.9e-31 138.7 155 54.2
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 8.7e-31 137.5 155 53.5
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 8.7e-31 137.5 152 56.6
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 8.7e-31 137.5 155 52.3
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 1.1e-30 137.1 155 53.5
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.5e-30 136.7 155 53.5
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.5e-30 136.7 155 53.5
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 2.5e-30 136.0 155 52.9
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.5e-30 136.0 155 54.2
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 5.6e-30 134.8 155 51.6
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 7.4e-30 134.4 155 52.3
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 9.6e-30 134.0 155 52.3
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.6e-29 133.3 155 52.9
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 2.1e-29 132.9 155 52.9
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 2.8e-29 132.5 155 51.6
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.8e-29 132.5 155 51.6
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 3.7e-29 132.1 155 52.3
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 4.8e-29 131.7 155 52.3
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 6.2e-29 131.3 155 53.5
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 6.2e-29 131.3 155 51.6
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 8.1e-29 131.0 155 51.6
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.1e-28 130.6 155 52.3
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 3.1e-28 129.0 156 52.6
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 4.0e-28 128.6 155 51.6
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 4.0e-28 128.6 155 49.7
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 5.3e-28 128.3 155 49.7
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 6.9e-28 127.9 155 51.6
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 6.9e-28 127.9 155 51.0
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 6.9e-28 127.9 156 52.6
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 9.0e-28 127.5 155 52.9
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.5e-27 126.7 155 51.0
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.5e-27 126.7 155 49.7
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 2.6e-27 125.9 156 50.6
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 7.6e-27 124.4 150 49.3
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 7.6e-27 124.4 155 49.7
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 7.6e-27 124.4 155 49.7
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 7.6e-27 124.4 155 51.0
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 1.0e-26 124.0 155 47.7
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.3e-26 123.6 153 47.7
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 1.7e-26 123.2 155 50.3
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 1.7e-26 123.2 155 47.7
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.7e-26 123.2 155 50.3
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.7e-26 123.2 155 48.4
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 1.7e-26 123.2 155 50.3
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.2e-26 122.9 155 50.3
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.2e-26 122.9 155 50.3
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 2.2e-26 122.9 155 49.0
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.9e-26 121.7 155 49.7
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 6.5e-26 121.3 155 49.0
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.5e-26 121.3 155 49.0
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.5e-26 121.3 155 49.0
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 8.4e-26 120.9 155 47.7
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 8.4e-26 120.9 155 47.7
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 8.4e-26 120.9 155 51.0
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 8.4e-26 120.9 155 50.3
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.1e-25 120.6 155 49.0
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 1.4e-25 120.2 155 49.7
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.4e-25 120.2 156 48.1
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.4e-25 120.2 155 47.7
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.9e-25 119.8 155 47.1
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 2.5e-25 119.4 156 46.2
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 2.5e-25 119.4 155 49.7
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.5e-25 119.4 155 49.0
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 2.5e-25 119.4 155 47.1
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 3.2e-25 119.0 153 47.1
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 4.2e-25 118.6 155 48.4
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.2e-25 118.6 155 49.0
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 7.1e-25 117.9 156 46.8
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 9.3e-25 117.5 156 47.4
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 9.3e-25 117.5 156 46.8
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 9.3e-25 117.5 156 47.4
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 9.3e-25 117.5 155 49.7
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.2e-24 117.1 156 47.4
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.2e-24 117.1 155 47.7
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.2e-24 117.1 155 47.1
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 1.6e-24 116.7 155 45.2
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.6e-24 116.7 155 47.1
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.6e-24 116.7 155 45.8
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.1e-24 116.3 155 47.7
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 2.7e-24 115.9 155 49.0
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 3.5e-24 115.5 156 46.2
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 4.6e-24 115.2 156 46.8
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 4.6e-24 115.2 156 46.2
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 4.6e-24 115.2 156 46.8
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 7.9e-24 114.4 156 46.8
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 7.9e-24 114.4 156 46.8
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 7.9e-24 114.4 155 47.7
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 7.9e-24 114.4 155 46.5
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.3e-23 113.6 155 45.8
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.3e-23 113.6 156 46.2
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 1.3e-23 113.6 155 45.8
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.8e-23 113.2 156 46.8
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 1.8e-23 113.2 156 46.8
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 1.8e-23 113.2 156 45.5
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 5.1e-23 111.7 150 48.0
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 8.7e-23 110.9 156 46.2
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.3e-20 101.7 82 64.6
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.2e-19 100.5 158 44.9
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 1.5e-19 100.1 151 46.4
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 4.5e-19 98.6 164 44.5
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 7.6e-19 97.8 83 62.7
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 2.2e-18 96.3 155 42.6
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 5.0e-18 95.1 130 46.9
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 4.2e-17 92.0 151 41.7
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 1.2e-16 90.5 153 43.1
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 2.1e-16 89.7 153 43.1
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.9e-14 83.2 155 36.8
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 1.3e-13 80.5 75 54.7
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 8.2e-13 77.8 153 37.3
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 1.1e-12 77.4 155 34.8
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 3.2e-09 65.9 155 32.9
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 7.4e-06 54.7 154 27.3


User provided reference genes

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