Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.1e-98 363.2 180 100.0
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-70 270.0 180 81.1
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 6.5e-62 241.1 155 83.9
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.9e-53 213.0 131 82.4
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 7.5e-42 174.5 137 69.3
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 2.8e-41 172.6 109 80.7
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 5.3e-40 168.3 149 63.8
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.1e-37 160.6 149 61.7
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.1e-37 160.6 149 61.7
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 2.5e-37 159.5 151 58.3
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 9.4e-37 157.5 148 62.8
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 2.1e-36 156.4 149 59.1
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 2.7e-36 156.0 149 59.7
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 1.0e-35 154.1 149 58.4
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 1.8e-35 153.3 148 62.2
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.8e-35 153.3 151 58.3
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 4.0e-35 152.1 149 57.0
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 6.8e-35 151.4 149 59.1
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 8.8e-35 151.0 149 58.4
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 8.8e-35 151.0 149 57.7
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.5e-34 150.2 149 58.4
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-34 150.2 146 61.0
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.0e-34 149.8 149 59.1
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 3.4e-34 149.1 151 58.3
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 9.8e-34 147.5 151 57.6
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.3e-33 147.1 168 54.2
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 1.3e-33 147.1 149 56.4
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 1.7e-33 146.7 163 53.4
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.7e-33 146.7 149 57.0
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.2e-33 146.4 151 57.6
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.2e-33 146.4 151 57.6
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 2.2e-33 146.4 151 57.0
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 1.1e-32 144.1 149 56.4
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.4e-32 143.7 149 56.4
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 1.4e-32 143.7 151 53.6
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 3.1e-32 142.5 151 57.0
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 3.1e-32 142.5 149 57.0
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 4.1e-32 142.1 149 57.0
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 7.0e-32 141.4 149 56.4
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 9.1e-32 141.0 149 55.0
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 1.2e-31 140.6 151 53.0
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.2e-31 140.6 149 55.0
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 1.2e-31 140.6 149 54.4
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.2e-31 140.6 151 56.3
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 1.2e-31 140.6 149 55.7
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 1.6e-31 140.2 149 54.4
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.0e-31 139.8 150 56.7
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 3.5e-31 139.0 149 55.0
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 7.7e-31 137.9 149 54.4
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 1.3e-30 137.1 149 55.7
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 2.9e-30 136.0 163 49.1
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 5.0e-30 135.2 149 53.7
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 6.5e-30 134.8 149 53.0
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 8.6e-30 134.4 149 54.4
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 8.6e-30 134.4 149 53.0
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 8.6e-30 134.4 149 54.4
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.1e-29 134.0 147 52.4
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.5e-29 133.7 149 51.7
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.9e-29 133.3 149 55.0
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.9e-29 133.3 149 55.0
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.9e-29 133.3 164 51.8
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 2.5e-29 132.9 149 51.7
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 2.5e-29 132.9 150 54.7
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.2e-29 132.5 163 47.9
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.2e-29 132.1 149 54.4
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 5.5e-29 131.7 149 53.7
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.5e-29 131.7 149 53.7
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.5e-29 131.7 149 53.7
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 5.5e-29 131.7 150 54.7
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 5.5e-29 131.7 149 53.0
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 9.5e-29 131.0 149 52.3
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 9.5e-29 131.0 150 54.0
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 9.5e-29 131.0 149 54.4
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.2e-28 130.6 149 54.4
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.2e-28 130.6 150 53.3
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.6e-28 130.2 149 53.7
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 2.1e-28 129.8 163 46.0
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.1e-28 129.8 149 54.4
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 2.1e-28 129.8 151 51.0
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.1e-28 129.8 149 53.7
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 2.1e-28 129.8 149 51.7
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.6e-28 129.0 149 53.7
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.6e-28 129.0 163 47.2
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 3.6e-28 129.0 149 50.3
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 4.7e-28 128.6 149 50.3
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.0e-27 127.5 149 52.3
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 1.4e-27 127.1 144 52.1
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.8e-27 126.7 149 48.3
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.8e-27 126.7 163 46.6
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 2.3e-27 126.3 149 51.0
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 3.0e-27 125.9 149 50.3
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 3.0e-27 125.9 149 50.3
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 4.0e-27 125.6 150 49.3
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 4.0e-27 125.6 150 50.0
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 4.0e-27 125.6 149 49.0
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 6.8e-27 124.8 149 49.7
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.2e-26 124.0 149 50.3
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.5e-26 123.6 150 48.7
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 2.0e-26 123.2 149 51.7
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 2.0e-26 123.2 150 49.3
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 2.6e-26 122.9 150 48.7
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 2.6e-26 122.9 149 52.3
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 3.4e-26 122.5 150 47.3
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 7.5e-26 121.3 150 50.7
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 7.5e-26 121.3 150 50.7
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 7.5e-26 121.3 150 49.3
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 7.5e-26 121.3 150 49.3
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 9.8e-26 120.9 149 49.7
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.3e-25 120.6 150 48.7
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 1.7e-25 120.2 150 46.7
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.7e-25 120.2 149 52.3
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.7e-25 120.2 149 49.7
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 1.7e-25 120.2 149 48.3
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.2e-25 119.8 150 48.7
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 2.8e-25 119.4 150 48.0
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 2.8e-25 119.4 150 48.7
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 2.8e-25 119.4 149 49.0
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 3.7e-25 119.0 144 52.1
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 6.3e-25 118.2 149 49.7
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 1.1e-24 117.5 150 48.7
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 7.0e-24 114.8 150 47.3
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 1.1e-21 107.5 146 47.3
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.1e-21 107.5 149 49.0
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 1.1e-21 107.5 158 47.5
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 1.5e-21 107.1 149 47.7
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.2e-20 104.0 82 65.9
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 8.0e-20 101.3 82 57.3
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.0e-19 100.9 124 50.8
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 3.0e-19 99.4 148 45.9
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 5.2e-19 98.6 96 49.0
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 5.2e-19 98.6 148 44.6
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.9e-19 97.8 83 62.7
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 2.6e-18 96.3 145 43.4
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 3.4e-18 95.9 149 40.9
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 3.5e-15 85.9 148 39.9
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 1.7e-14 83.6 75 57.3
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 1.9e-13 80.1 149 36.2
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.6e-12 77.0 163 35.0
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 5.4e-08 62.0 148 30.4
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 4.6e-07 58.9 121 39.7
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 2.3e-06 56.6 167 32.3
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 3.0e-06 56.2 55 50.9
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 5.0e-06 55.5 168 31.0
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 8.6e-06 54.7 40 77.5
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 8.6e-06 54.7 174 28.7


User provided reference genes

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