Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 3.6e-94 348.2 173 100.0
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 4.8e-70 268.1 180 81.1
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 3.8e-59 231.9 149 85.2
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 8.5e-43 177.6 135 70.4
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.4e-40 170.2 136 71.3
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 6.9e-37 157.9 107 78.5
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 4.7e-33 145.2 138 63.0
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 4.7e-33 145.2 138 63.0
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 4.7e-33 145.2 138 63.0
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.3e-32 142.9 138 63.0
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 6.7e-32 141.4 136 60.3
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 8.8e-32 141.0 138 63.0
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 8.8e-32 141.0 136 59.6
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 3.3e-31 139.0 138 60.9
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 4.4e-31 138.7 138 60.9
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 4.4e-31 138.7 138 59.4
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.7e-30 136.7 138 59.4
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 1.7e-30 136.7 138 58.0
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.2e-30 136.3 138 60.1
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 6.3e-30 134.8 138 58.0
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.1e-29 134.0 138 59.4
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 7.0e-29 131.3 138 55.8
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 9.1e-29 131.0 138 59.4
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 9.1e-29 131.0 138 56.5
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 9.1e-29 131.0 138 58.0
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 1.5e-28 130.2 138 57.2
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-28 130.2 138 59.4
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 2.0e-28 129.8 138 56.5
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 2.6e-28 129.4 138 57.2
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 4.5e-28 128.6 138 57.2
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 4.5e-28 128.6 138 57.2
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 4.5e-28 128.6 138 57.2
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 5.9e-28 128.3 138 55.1
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 5.9e-28 128.3 138 56.5
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 2.2e-27 126.3 138 55.1
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 3.8e-27 125.6 138 57.2
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.8e-27 125.6 138 56.5
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 6.5e-27 124.8 138 54.3
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 8.5e-27 124.4 138 56.5
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.5e-26 123.6 138 55.8
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 1.9e-26 123.2 138 54.3
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 2.5e-26 122.9 138 54.3
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 2.5e-26 122.9 138 52.9
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 3.2e-26 122.5 138 55.1
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 3.2e-26 122.5 138 55.1
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 4.2e-26 122.1 138 56.5
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 5.5e-26 121.7 138 54.3
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 7.2e-26 121.3 138 54.3
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 7.2e-26 121.3 138 53.6
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 9.4e-26 120.9 138 53.6
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.1e-25 119.8 138 54.3
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 3.6e-25 119.0 138 52.2
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 4.7e-25 118.6 138 52.2
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 4.7e-25 118.6 138 54.3
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 4.7e-25 118.6 139 55.4
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 6.1e-25 118.2 138 55.8
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 6.1e-25 118.2 138 53.6
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 6.1e-25 118.2 139 54.0
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.0e-24 117.5 139 55.4
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.4e-24 117.1 140 53.6
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 3.0e-24 115.9 138 52.2
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 4.0e-24 115.5 138 51.4
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 4.0e-24 115.5 138 51.4
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 5.2e-24 115.2 138 52.9
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 5.2e-24 115.2 138 53.6
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 6.7e-24 114.8 138 50.7
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 8.8e-24 114.4 138 50.0
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 8.8e-24 114.4 138 52.2
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.1e-23 114.0 139 54.0
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.5e-23 113.6 136 50.0
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 1.5e-23 113.6 138 50.0
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.5e-23 113.6 138 52.9
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 1.5e-23 113.6 138 51.4
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 2.0e-23 113.2 138 51.4
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 2.6e-23 112.8 138 53.6
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 3.3e-23 112.5 138 51.4
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.3e-23 112.5 138 52.2
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.3e-23 112.5 138 52.2
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 4.4e-23 112.1 138 54.3
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 4.4e-23 112.1 138 52.9
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.4e-23 112.1 138 52.2
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 5.7e-23 111.7 138 51.4
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.7e-23 111.7 138 51.4
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.7e-23 111.7 138 51.4
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 7.5e-23 111.3 136 49.3
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 7.5e-23 111.3 136 50.7
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 7.5e-23 111.3 136 50.7
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 9.7e-23 110.9 138 51.4
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 9.7e-23 110.9 138 52.2
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.3e-22 110.5 138 51.4
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.3e-22 110.5 137 50.4
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.3e-22 110.5 138 50.7
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.7e-22 110.2 136 50.0
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.7e-22 110.2 138 50.0
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.2e-22 109.8 138 50.0
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.2e-22 109.8 138 51.4
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 2.2e-22 109.8 138 51.4
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 2.8e-22 109.4 137 50.4
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 2.8e-22 109.4 137 48.9
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 3.7e-22 109.0 137 51.1
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 3.7e-22 109.0 137 50.4
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.7e-22 109.0 138 51.4
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 3.7e-22 109.0 136 50.7
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 4.8e-22 108.6 137 50.4
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 4.8e-22 108.6 138 48.6
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 6.3e-22 108.2 137 51.1
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 6.3e-22 108.2 137 48.2
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 1.1e-21 107.5 137 48.9
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 1.1e-21 107.5 138 46.4
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.1e-21 107.5 138 51.4
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 1.1e-21 107.5 137 50.4
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.8e-21 106.7 138 46.4
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 2.4e-21 106.3 137 50.4
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.4e-21 106.3 138 49.3
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.4e-21 106.3 152 46.7
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 3.1e-21 105.9 137 50.4
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 3.1e-21 105.9 137 50.4
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 5.3e-21 105.1 137 49.6
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 9.1e-21 104.4 138 47.1
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.2e-20 104.0 139 48.9
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 1.2e-20 104.0 139 48.9
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.2e-20 104.0 138 48.6
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 5.9e-20 101.7 139 47.5
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.3e-19 100.5 138 46.4
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 3.6e-17 92.4 147 46.9
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 8.0e-17 91.3 141 46.8
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 1.8e-16 90.1 134 47.0
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 1.2e-15 87.4 138 44.2
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.0e-15 86.7 98 53.1
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 4.4e-15 85.5 134 43.3
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 2.2e-14 83.2 136 46.3
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.7e-14 82.4 73 60.3
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 4.8e-14 82.0 136 45.6
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 9.1e-13 77.8 134 39.6
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 1.9e-10 70.1 138 37.0
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 1.9e-10 70.1 134 40.3
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 2.1e-09 66.6 65 52.3
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 9.8e-07 57.8 138 34.1
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 2.2e-06 56.6 119 40.3


User provided reference genes

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