Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.4e-116 422.9 206 100.0
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 3.3e-54 215.7 131 82.4
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 7.0e-44 181.4 135 70.4
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 2.7e-43 179.5 109 83.5
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 3.6e-40 169.1 107 81.3
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 7.0e-28 128.3 82 75.6
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 4.5e-27 125.6 97 67.0
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 4.5e-27 125.6 97 67.0
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.7e-26 123.6 90 70.0
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.5e-25 120.6 82 70.7
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 7.3e-25 118.2 84 66.7
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 7.3e-25 118.2 98 62.2
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.0e-23 114.4 82 68.3
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 1.4e-23 114.0 82 67.1
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.8e-23 113.6 84 65.5
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 2.3e-23 113.2 82 65.9
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 5.2e-23 112.1 97 58.8
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 6.8e-23 111.7 83 63.9
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 6.8e-23 111.7 82 63.4
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 2.0e-22 110.2 82 65.9
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.6e-22 109.8 98 60.2
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 3.4e-22 109.4 83 62.7
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 3.4e-22 109.4 82 65.9
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 5.8e-22 108.6 82 64.6
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 5.8e-22 108.6 87 63.2
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 5.8e-22 108.6 82 64.6
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 7.5e-22 108.2 101 58.4
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 9.8e-22 107.8 81 66.7
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 1.3e-21 107.5 84 63.1
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 2.9e-21 106.3 82 61.0
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 8.3e-21 104.8 84 60.7
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.4e-20 104.0 82 64.6
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.8e-20 103.6 84 60.7
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.8e-20 103.6 84 60.7
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.8e-20 103.6 84 59.5
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 2.4e-20 103.2 82 58.5
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.2e-20 102.8 104 55.8
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 3.2e-20 102.8 85 58.8
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 4.1e-20 102.4 82 63.4
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 5.4e-20 102.1 58 89.7
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 5.4e-20 102.1 82 63.4
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 7.0e-20 101.7 99 54.5
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 7.0e-20 101.7 82 62.2
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 9.2e-20 101.3 99 54.5
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 9.2e-20 101.3 82 58.5
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 9.2e-20 101.3 82 62.2
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 9.2e-20 101.3 81 63.0
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-19 100.9 59 88.1
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.2e-19 100.9 98 54.1
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 1.6e-19 100.5 82 56.1
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 1.6e-19 100.5 93 55.9
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 2.0e-19 100.1 81 55.6
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.0e-19 100.1 82 61.0
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 2.7e-19 99.8 84 59.5
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 2.7e-19 99.8 82 57.3
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.7e-19 99.8 82 58.5
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 4.6e-19 99.0 98 53.1
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 4.6e-19 99.0 82 56.1
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 4.6e-19 99.0 91 56.0
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.0e-19 98.6 98 55.1
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.0e-19 98.6 98 55.1
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 7.8e-19 98.2 82 59.8
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 7.8e-19 98.2 82 57.3
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.0e-18 97.8 83 62.7
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.0e-18 97.8 83 60.2
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 1.0e-18 97.8 82 56.1
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.0e-18 97.8 85 58.8
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 1.3e-18 97.4 83 60.2
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 2.3e-18 96.7 82 57.3
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 2.3e-18 96.7 82 59.8
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 3.0e-18 96.3 82 59.8
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.0e-18 96.3 82 59.8
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.0e-18 96.3 82 59.8
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.0e-18 96.3 82 59.8
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 3.0e-18 96.3 84 57.1
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 3.0e-18 96.3 82 59.8
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.0e-18 95.5 82 54.9
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 5.0e-18 95.5 83 59.0
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 5.0e-18 95.5 56 89.3
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 6.6e-18 95.1 83 59.0
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 8.6e-18 94.7 82 57.3
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 8.6e-18 94.7 93 49.5
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 8.6e-18 94.7 82 52.4
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.1e-17 94.4 82 58.5
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.1e-17 94.4 82 57.3
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.1e-17 94.4 98 53.1
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.5e-17 94.0 79 60.8
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.5e-17 94.0 81 53.1
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 1.9e-17 93.6 82 51.2
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.5e-17 93.2 82 58.5
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.5e-17 93.2 82 53.7
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 4.3e-17 92.4 85 55.3
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 4.3e-17 92.4 85 55.3
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 4.3e-17 92.4 82 57.3
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 4.3e-17 92.4 83 57.8
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 7.3e-17 91.7 84 56.0
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 7.3e-17 91.7 83 55.4
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 9.5e-17 91.3 85 54.1
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 9.5e-17 91.3 82 52.4
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.2e-16 90.9 82 56.1
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 2.1e-16 90.1 83 53.0
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 2.1e-16 90.1 100 49.0
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 2.1e-16 90.1 83 54.2
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 2.1e-16 90.1 82 53.7
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.8e-16 89.7 82 53.7
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.8e-16 89.7 82 53.7
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 3.6e-16 89.4 83 54.2
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 3.6e-16 89.4 83 54.2
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 3.6e-16 89.4 82 54.9
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 4.7e-16 89.0 82 53.7
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 6.2e-16 88.6 83 50.6
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.1e-15 87.8 82 53.7
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 1.4e-15 87.4 83 53.0
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 1.8e-15 87.0 83 51.8
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 1.8e-15 87.0 83 51.8
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 1.8e-15 87.0 79 59.5
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 1.8e-15 87.0 82 53.7
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 3.1e-15 86.3 100 47.0
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 4.0e-15 85.9 100 47.0
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 4.0e-15 85.9 98 51.0
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 5.2e-15 85.5 83 53.0
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 6.8e-15 85.1 100 45.0
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 8.9e-15 84.7 83 54.2
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 8.9e-15 84.7 83 54.2
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 8.9e-15 84.7 81 51.9
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 9.8e-14 81.3 83 49.4
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 9.8e-14 81.3 75 54.7
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 3.2e-12 76.3 95 44.2
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 1.6e-11 73.9 101 46.5
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 4.6e-11 72.4 77 48.1
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 4.6e-11 72.4 80 45.0
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 1.7e-10 70.5 78 43.6
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 8.6e-10 68.2 78 42.3
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.8e-08 63.2 57 54.4
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 8.1e-08 61.6 81 38.3
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 8.1e-08 61.6 78 39.7
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 3.1e-07 59.7 84 36.9
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 4.4e-06 55.8 55 47.3


User provided reference genes

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