Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-48 196.1 101 100.0
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.3e-40 168.7 100 88.0
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 6.3e-38 160.6 100 86.0
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 6.5e-35 150.6 146 61.0
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 5.7e-31 137.5 152 56.6
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 2.4e-29 132.1 138 59.4
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 9.4e-26 120.2 127 57.5
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 2.8e-22 108.6 125 56.0
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.4e-21 105.5 123 55.3
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 2.4e-21 105.5 123 55.3
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 3.1e-21 105.1 125 52.0
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 6.9e-21 104.0 125 52.0
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 2.6e-20 102.1 123 51.2
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 1.7e-19 99.4 125 49.6
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 2.2e-19 99.0 56 92.9
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.2e-19 99.0 126 51.6
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 3.8e-19 98.2 125 50.4
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 5.0e-19 97.8 125 51.2
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 6.5e-19 97.4 125 52.0
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.5e-19 97.1 125 51.2
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.1e-18 96.7 123 52.0
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.1e-18 96.7 123 52.0
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.4e-18 96.3 125 52.0
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 1.4e-18 96.3 125 50.4
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 2.5e-18 95.5 123 51.2
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 2.5e-18 95.5 125 50.4
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 5.5e-18 94.4 127 48.0
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 5.5e-18 94.4 125 48.8
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 9.4e-18 93.6 125 49.6
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 1.2e-17 93.2 125 49.6
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.6e-17 92.8 56 89.3
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 1.6e-17 92.8 125 48.0
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 2.1e-17 92.4 126 49.2
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.7e-17 92.0 123 48.0
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 3.6e-17 91.7 123 48.0
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 4.7e-17 91.3 126 49.2
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 6.1e-17 90.9 126 48.4
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 6.1e-17 90.9 126 47.6
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.0e-16 90.1 125 46.4
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 1.4e-16 89.7 124 49.2
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 1.4e-16 89.7 125 48.0
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.8e-16 89.4 123 47.2
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 1.8e-16 89.4 125 49.6
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 2.3e-16 89.0 127 46.5
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 3.0e-16 88.6 126 46.0
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 3.9e-16 88.2 126 46.8
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 3.9e-16 88.2 125 48.8
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 3.9e-16 88.2 125 48.8
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 5.1e-16 87.8 125 46.4
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.1e-16 87.8 123 47.2
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 5.1e-16 87.8 123 47.2
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 8.8e-16 87.0 124 47.6
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.1e-15 86.7 126 46.0
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.1e-15 86.7 125 47.2
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.5e-15 86.3 125 48.8
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.5e-15 86.3 125 48.8
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 2.0e-15 85.9 125 46.4
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.0e-15 85.9 124 48.4
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 2.6e-15 85.5 123 47.2
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 3.3e-15 85.1 121 47.1
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 3.3e-15 85.1 124 46.8
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 4.4e-15 84.7 125 48.0
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 4.4e-15 84.7 123 43.1
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 4.4e-15 84.7 127 44.1
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 4.4e-15 84.7 125 44.8
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 5.7e-15 84.3 125 45.6
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 5.7e-15 84.3 125 44.8
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 1.3e-14 83.2 119 43.7
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.3e-14 83.2 125 46.4
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 1.7e-14 82.8 123 44.7
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.7e-14 82.8 126 44.4
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 2.2e-14 82.4 124 45.2
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 2.2e-14 82.4 121 45.5
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 2.8e-14 82.0 127 44.1
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 2.8e-14 82.0 127 44.1
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 2.8e-14 82.0 129 42.6
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.8e-14 82.0 123 46.3
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.8e-14 82.0 123 42.3
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.8e-14 82.0 125 45.6
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.8e-14 82.0 125 46.4
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 2.8e-14 82.0 125 47.2
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 2.8e-14 82.0 123 43.9
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 3.7e-14 81.6 127 44.1
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 3.7e-14 81.6 119 48.7
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.7e-14 81.6 122 42.6
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 3.7e-14 81.6 125 43.2
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 3.7e-14 81.6 127 43.3
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 4.8e-14 81.3 127 43.3
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 4.8e-14 81.3 127 43.3
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 4.8e-14 81.3 127 43.3
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 6.3e-14 80.9 121 45.5
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.3e-14 80.9 125 46.4
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.3e-14 80.9 125 46.4
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.3e-14 80.9 125 46.4
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.3e-14 80.9 125 46.4
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 6.3e-14 80.9 123 42.3
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 8.2e-14 80.5 125 42.4
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 8.2e-14 80.5 129 41.1
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 8.2e-14 80.5 127 43.3
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 8.2e-14 80.5 121 44.6
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 8.2e-14 80.5 125 45.6
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 8.2e-14 80.5 125 45.6
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 8.2e-14 80.5 125 45.6
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 1.1e-13 80.1 128 42.2
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.4e-13 79.7 125 42.4
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.4e-13 79.7 127 41.7
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 1.4e-13 79.7 125 44.0
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 1.8e-13 79.3 125 42.4
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 3.1e-13 78.6 124 45.2
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 4.1e-13 78.2 125 40.0
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 5.3e-13 77.8 127 43.3
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 5.3e-13 77.8 127 41.7
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 5.3e-13 77.8 125 44.0
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 9.1e-13 77.0 126 42.9
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 9.1e-13 77.0 126 42.9
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.6e-12 76.3 121 43.8
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 1.6e-12 76.3 125 44.0
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.6e-12 76.3 125 43.2
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 2.6e-12 75.5 121 46.3
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 5.9e-12 74.3 127 40.9
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 7.7e-12 73.9 124 42.7
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.0e-11 73.6 124 42.7
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 2.2e-11 72.4 125 44.0
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 2.9e-11 72.0 141 37.6
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 4.2e-10 68.2 123 38.2
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 5.5e-10 67.8 132 39.4
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 1.6e-09 66.2 132 38.6
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 3.6e-09 65.1 122 42.6
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.4e-08 63.2 56 64.3
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 1.8e-08 62.8 131 41.2
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.3e-08 62.4 57 63.2
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 3.0e-08 62.0 123 42.3
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 8.8e-08 60.5 103 41.7
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 7.5e-07 57.4 123 35.8


User provided reference genes

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