Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 7.9e-49 196.8 102 100.0
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 3.8e-43 177.9 102 92.2
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 5.2e-40 167.5 100 88.0
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 9.1e-37 156.8 148 62.8
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 3.5e-36 154.8 154 61.0
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 1.0e-32 143.3 138 63.0
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 5.0e-27 124.4 127 62.2
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 7.2e-26 120.6 127 58.3
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.8e-25 118.6 125 59.2
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 2.8e-25 118.6 125 59.2
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 8.9e-24 113.6 127 58.3
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 1.5e-23 112.8 126 56.3
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 2.2e-22 109.0 126 54.8
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 2.8e-22 108.6 126 55.6
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 4.9e-22 107.8 128 55.5
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 8.3e-22 107.1 127 55.9
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 8.3e-22 107.1 126 53.2
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.1e-21 106.7 126 55.6
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 1.1e-21 106.7 126 53.2
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 1.4e-21 106.3 127 55.1
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.1e-21 105.1 127 55.1
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 3.1e-21 105.1 58 93.1
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 5.4e-21 104.4 126 54.8
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 9.2e-21 103.6 128 52.3
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 9.2e-21 103.6 126 52.4
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 9.2e-21 103.6 127 52.8
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.6e-20 102.8 127 53.5
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 1.6e-20 102.8 126 53.2
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 2.0e-20 102.4 128 52.3
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.7e-20 102.1 126 52.4
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.7e-20 102.1 127 52.0
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 3.5e-20 101.7 126 53.2
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 4.5e-20 101.3 128 53.1
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 5.9e-20 100.9 125 53.6
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 7.8e-20 100.5 126 53.2
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 7.8e-20 100.5 126 51.6
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 7.8e-20 100.5 126 54.0
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 1.0e-19 100.1 128 53.1
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 1.0e-19 100.1 126 53.2
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.3e-19 99.8 127 52.0
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 1.7e-19 99.4 126 51.6
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.7e-19 99.4 126 53.2
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 1.7e-19 99.4 126 53.2
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.3e-19 99.0 58 89.7
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 2.3e-19 99.0 129 50.4
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.3e-19 99.0 127 52.8
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 3.8e-19 98.2 128 50.8
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 3.8e-19 98.2 126 51.6
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 3.8e-19 98.2 127 52.0
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 3.8e-19 98.2 126 51.6
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 5.0e-19 97.8 126 53.2
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 5.0e-19 97.8 126 53.2
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 1.1e-18 96.7 131 47.3
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.1e-18 96.7 127 52.0
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.5e-18 96.3 127 50.4
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 1.5e-18 96.3 128 50.0
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.5e-18 96.3 128 52.3
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.9e-18 95.9 128 49.2
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 2.5e-18 95.5 126 51.6
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 3.3e-18 95.1 127 50.4
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 4.3e-18 94.7 127 49.6
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 5.6e-18 94.4 123 49.6
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.6e-18 94.4 124 50.8
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 5.6e-18 94.4 127 51.2
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 5.6e-18 94.4 127 49.6
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 7.3e-18 94.0 129 48.8
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 7.3e-18 94.0 129 48.8
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 9.5e-18 93.6 127 49.6
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.2e-17 93.2 127 51.2
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.2e-17 93.2 127 51.2
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.2e-17 93.2 127 51.2
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.2e-17 93.2 127 51.2
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 1.2e-17 93.2 125 48.0
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 1.6e-17 92.8 122 47.5
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.6e-17 92.8 128 48.4
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 1.6e-17 92.8 130 46.9
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 1.6e-17 92.8 128 48.4
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.6e-17 92.8 129 48.1
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 1.6e-17 92.8 128 48.4
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 1.6e-17 92.8 127 50.4
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.6e-17 92.8 127 50.4
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.6e-17 92.8 127 50.4
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.6e-17 92.8 124 50.8
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.6e-17 92.8 124 50.8
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 2.1e-17 92.4 128 47.7
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.1e-17 92.4 126 50.8
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 2.1e-17 92.4 128 47.7
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 2.8e-17 92.0 127 48.8
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 3.6e-17 91.7 123 51.2
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 3.6e-17 91.7 126 50.8
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 3.6e-17 91.7 127 49.6
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 3.6e-17 91.7 127 48.0
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 3.6e-17 91.7 127 47.2
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 4.7e-17 91.3 129 47.3
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 6.1e-17 90.9 128 47.7
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 6.1e-17 90.9 125 48.8
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 6.1e-17 90.9 131 45.8
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 6.1e-17 90.9 127 47.2
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 1.0e-16 90.1 128 47.7
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 1.0e-16 90.1 128 46.9
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.0e-16 90.1 125 46.4
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.0e-16 90.1 127 48.8
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.8e-16 89.4 128 46.9
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 2.3e-16 89.0 128 47.7
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 4.0e-16 88.2 127 48.0
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 4.0e-16 88.2 127 48.0
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 4.0e-16 88.2 126 50.0
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 4.0e-16 88.2 124 46.0
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 5.2e-16 87.8 128 44.5
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 5.2e-16 87.8 126 50.0
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 6.8e-16 87.4 128 46.1
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 8.9e-16 87.0 124 46.0
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 8.9e-16 87.0 126 49.2
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 8.9e-16 87.0 124 47.6
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 8.9e-16 87.0 127 47.2
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.2e-15 86.7 123 46.3
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 2.6e-15 85.5 143 42.7
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 2.6e-15 85.5 126 48.4
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 4.4e-15 84.7 128 46.9
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 5.8e-15 84.3 128 50.8
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 5.8e-15 84.3 126 49.2
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 1.7e-14 82.8 123 47.2
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 6.4e-14 80.9 126 47.6
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 5.4e-13 77.8 124 45.2
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 7.0e-13 77.4 133 43.6
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 1.6e-12 76.3 124 41.9
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 2.7e-12 75.5 125 44.0
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 3.5e-12 75.1 130 43.8
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.3e-11 73.2 127 46.5
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 1.7e-11 72.8 136 44.1
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.8e-09 65.5 59 64.4
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 2.8e-09 65.5 125 40.0
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.0e-09 63.9 58 63.8
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 8.0e-09 63.9 103 45.6
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 6.8e-08 60.8 138 37.0
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 7.5e-07 57.4 130 33.1
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 3.7e-06 55.1 58 51.7
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 8.3e-06 53.9 127 35.4
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 8.3e-06 53.9 40 77.5


User provided reference genes

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