Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 1.3e-88 329.7 165 100.0
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 5.7e-81 304.3 164 88.4
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 5.7e-81 304.3 164 89.0
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 5.7e-81 304.3 164 88.4
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 7.5e-81 303.9 164 88.4
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 2.2e-80 302.4 164 89.0
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 4.8e-80 301.2 163 87.7
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 6.3e-80 300.8 163 88.3
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 6.3e-80 300.8 164 87.2
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 1.8e-79 299.3 163 86.5
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 2.4e-79 298.9 163 86.5
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 3.1e-79 298.5 163 87.7
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 4.1e-79 298.1 163 88.3
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 5.4e-79 297.7 163 86.5
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 5.4e-79 297.7 163 86.5
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 7.0e-79 297.4 163 86.5
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 9.1e-79 297.0 163 86.5
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 9.1e-79 297.0 163 87.1
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.2e-78 296.6 164 86.6
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 1.2e-78 296.6 163 86.5
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 2.0e-78 295.8 163 86.5
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 2.7e-78 295.4 164 86.6
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 3.5e-78 295.0 164 85.4
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.5e-78 294.7 163 85.9
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 4.5e-78 294.7 163 85.9
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 5.9e-78 294.3 163 85.9
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 7.7e-78 293.9 163 87.1
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 7.7e-78 293.9 164 86.6
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 7.7e-78 293.9 163 87.1
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 7.7e-78 293.9 163 85.3
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 7.7e-78 293.9 164 84.8
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 1.0e-77 293.5 163 85.9
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 2.2e-77 292.4 163 85.3
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 2.2e-77 292.4 163 85.3
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 2.2e-77 292.4 163 85.3
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 2.2e-77 292.4 163 85.3
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 2.2e-77 292.4 163 85.3
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 2.2e-77 292.4 163 85.3
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 2.9e-77 292.0 163 84.7
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 2.9e-77 292.0 164 86.0
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 2.9e-77 292.0 163 84.7
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 2.9e-77 292.0 163 84.0
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 3.8e-77 291.6 164 85.4
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 5.0e-77 291.2 164 85.4
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 5.0e-77 291.2 163 85.9
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.0e-77 291.2 160 86.2
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 6.5e-77 290.8 170 82.9
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 6.5e-77 290.8 170 82.9
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 1.5e-76 289.7 163 84.7
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 1.9e-76 289.3 163 84.7
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 1.9e-76 289.3 163 85.3
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 2.5e-76 288.9 163 85.3
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 2.5e-76 288.9 163 85.3
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 3.2e-76 288.5 163 84.0
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 4.2e-76 288.1 163 84.0
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 4.2e-76 288.1 163 83.4
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 5.5e-76 287.7 163 84.0
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 5.5e-76 287.7 164 83.5
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 7.2e-76 287.3 163 84.0
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 9.4e-76 287.0 163 84.0
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 1.6e-75 286.2 163 84.0
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 4.7e-75 284.6 163 83.4
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 4.7e-75 284.6 163 82.2
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 1.0e-74 283.5 163 84.7
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 4.0e-74 281.6 163 82.2
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 5.2e-74 281.2 163 82.2
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 1.2e-73 280.0 163 82.2
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 1.5e-73 279.6 164 83.5
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 1.5e-73 279.6 162 83.3
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 1.5e-73 279.6 167 81.4
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 1.5e-73 279.6 163 81.6
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 2.0e-73 279.3 163 81.6
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 2.0e-73 279.3 163 82.2
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 2.6e-73 278.9 199 71.4
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 2.6e-73 278.9 167 80.8
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 4.4e-73 278.1 163 81.0
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 5.7e-73 277.7 163 81.0
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 7.5e-73 277.3 163 81.0
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 2.2e-72 275.8 162 80.2
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 2.8e-72 275.4 163 80.4
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 4.9e-72 274.6 164 82.3
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 6.3e-72 274.2 163 81.0
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 8.3e-72 273.9 163 79.8
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 1.1e-71 273.5 163 81.0
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 3.1e-71 271.9 163 80.4
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 3.1e-71 271.9 163 78.5
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 5.4e-71 271.2 167 79.0
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 1.6e-70 269.6 163 79.1
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 1.6e-70 269.6 162 78.4
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 5.9e-70 267.7 162 78.4
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 8.6e-69 263.8 176 75.0
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 2.6e-65 252.3 138 86.2
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 2.7e-62 242.3 134 85.8
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 7.8e-62 240.7 126 96.8
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 7.8e-62 240.7 126 96.8
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 7.3e-60 234.2 171 70.8
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 6.2e-59 231.1 162 66.0
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 1.8e-58 229.6 163 71.8
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 9.2e-55 217.2 132 81.1
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 2.1e-51 206.1 165 60.0
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 3.6e-51 205.3 165 58.2
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 3.1e-50 202.2 132 74.2
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 6.8e-50 201.1 132 73.5
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 1.9e-44 183.0 165 53.9
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 8.9e-42 174.1 163 57.1
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 8.9e-34 147.5 132 51.5
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 1.2e-33 147.1 82 81.7
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 2.2e-32 142.9 107 69.2
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 8.1e-27 124.4 67 89.6
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.1e-26 124.0 68 82.4
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 5.8e-25 118.2 176 35.2
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 2.9e-24 115.9 55 100.0
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 3.5e-22 109.0 53 92.5
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 7.9e-22 107.8 169 35.5
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 3.6e-19 99.0 104 57.7
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 2.9e-16 89.4 184 36.4
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 3.5e-14 82.4 69 62.3
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 3.9e-13 79.0 115 47.0
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 1.1e-10 70.9 38 81.6
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 1.5e-09 67.0 39 79.5
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 1.5e-09 67.0 39 79.5
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 2.1e-06 56.6 32 81.2


User provided reference genes

Program Settings