Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A49T37 Lonicera japonica HOM05D002804 ORTHO05D003755 4.1e-103 378.3 216 100.0
Lj5A312T57 Lonicera japonica HOM05D002804 ORTHO05D003755 4.6e-62 241.9 198 77.8
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 5.1e-29 132.1 207 49.8
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 1.5e-28 130.6 203 50.7
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 3.3e-28 129.4 206 49.5
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 1.3e-27 127.5 205 49.3
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 1.1e-26 124.4 201 51.7
MD04G1183300 Malus domestica HOM05D002804 ORTHO05D003755 5.3e-26 122.1 117 68.4
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 1.2e-25 120.9 205 43.9
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 1.5e-25 120.6 179 43.0
Thecc.08G200300 Theobroma cacao HOM05D002804 ORTHO05D003755 2.6e-25 119.8 196 50.5
Oeu029180.1 Olea europaea HOM05D002804 ORTHO05D003755 3.4e-25 119.4 198 53.0
CAN.G1379.37 Capsicum annuum HOM05D002804 ORTHO05D003755 7.6e-25 118.2 198 46.5
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 2.9e-24 116.3 130 56.2
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 2.9e-24 116.3 173 44.5
Cc02_g36880 Coffea canephora HOM05D002804 ORTHO05D003755 3.8e-24 115.9 211 46.0
Actinidia17724 Actinidia chinensis HOM05D002804 ORTHO05D003755 6.4e-24 115.2 201 49.3
Duzib116G0715 Durio zibethinus HOM05D002804 ORTHO05D003755 8.4e-24 114.8 141 55.3
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 1.1e-23 114.4 194 40.7
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 3.2e-23 112.8 116 63.8
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 3.2e-23 112.8 118 53.4
Ah.02g130510 Amaranthus hybridus HOM05D002804 ORTHO05D003755 5.5e-23 112.1 184 53.8
MSTRG.5178 Avicennia marina HOM05D002804 ORTHO05D003755 5.5e-23 112.1 167 53.3
Carub.0006s0240 Capsella rubella HOM05D002804 ORTHO05D003755 5.5e-23 112.1 121 58.7
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 9.3e-23 111.3 94 75.5
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 1.6e-22 110.5 118 62.7
EL10Ac6g13418 Beta vulgaris HOM05D002804 ORTHO05D003755 1.6e-22 110.5 187 53.5
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 2.1e-22 110.2 125 51.2
Prupe.6G301800 Prunus persica HOM05D002804 ORTHO05D003755 3.5e-22 109.4 88 77.3
CSS0047980 Camellia sinensis var. sinensis HOM05D002804 ORTHO05D003755 4.6e-22 109.0 198 53.0
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.0e-22 108.6 131 51.9
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 7.9e-22 108.2 146 43.2
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 3.0e-21 106.3 124 48.4
Migut.N00995 Erythranthe guttata HOM05D002804 ORTHO05D003755 3.9e-21 105.9 205 46.3
Gohir.D09G113800 Gossypium hirsutum HOM05D002804 ORTHO05D003755 5.1e-21 105.5 206 45.1
HanXRQChr07g0193711 Helianthus annuus HOM05D002804 ORTHO05D003755 5.1e-21 105.5 126 60.3
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 6.7e-21 105.1 131 51.1
Gorai.006G131500 Gossypium raimondii HOM05D002804 ORTHO05D003755 6.7e-21 105.1 206 45.1
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 6.7e-21 105.1 126 50.0
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 1.5e-20 104.0 206 39.8
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.9e-20 103.6 205 38.5
unitig_22.g5757 Utricularia gibba HOM05D002804 ORTHO05D003755 2.5e-20 103.2 145 51.0
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.3e-20 102.8 87 72.4
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.3e-20 102.4 87 57.5
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 4.3e-20 102.4 111 60.4
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 5.6e-20 102.1 123 54.5
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 1.3e-19 100.9 191 42.9
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 1.6e-19 100.5 121 47.9
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 1.6e-19 100.5 193 37.8
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 2.8e-19 99.8 156 40.4
Sed0019381 Sechium edule HOM05D002804 ORTHO05D003755 6.2e-19 98.6 125 57.6
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 1.1e-18 97.8 91 51.6
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 3.1e-18 96.3 86 58.1
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 3.1e-18 96.3 192 37.5
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 4.0e-18 95.9 91 52.7
CSS0012453 Camellia sinensis var. sinensis HOM05D002804 ORTHO05D003755 5.3e-18 95.5 200 48.5
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 5.3e-18 95.5 214 35.5
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 6.9e-18 95.1 127 45.7
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 1.2e-17 94.4 190 40.5
SGA_v2.0_scaffold658G53387 Striga asiatica HOM05D002804 ORTHO05D003755 2.0e-17 93.6 203 47.3
SalBow4G0464 Salvia bowleyana HOM05D002804 ORTHO05D003755 2.6e-17 93.2 129 53.5
Sc14g0008950 Simmondsia chinensis HOM05D002804 ORTHO05D003755 3.4e-17 92.8 137 43.8
HPP92_022010 Vanilla planifolia HOM05D002804 ORTHO05D003755 3.4e-17 92.8 152 52.0
ECA236G4290 Erigeron canadensis HOM05D002804 ORTHO05D003755 4.5e-17 92.4 125 62.4
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 4.5e-17 92.4 99 62.6
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 4.9e-16 89.0 127 43.3
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 8.4e-16 88.2 170 38.8
Zm00001eb429950 Zea mays HOM05D002804 ORTHO05D003755 2.1e-14 83.6 120 57.5
SEGI_29468 Sequoiadendron giganteum HOM05D002804 ORTHO05D003755 5.7e-12 75.5 94 55.3
AUR62005554 Chenopodium quinoa HOM05D002804 ORTHO05D003755 5.3e-10 68.9 123 52.8
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 9.0e-10 68.2 95 56.8


User provided reference genes

Program Settings