Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 2.0e-43 178.7 89 100.0
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 1.7e-39 165.6 89 95.5
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 8.8e-36 153.3 89 87.6
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 2.0e-16 89.0 129 43.4
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 4.5e-16 87.8 126 45.2
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 1.3e-15 86.3 129 44.2
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 1.7e-15 85.9 127 44.1
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 2.9e-15 85.1 129 43.4
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 3.8e-15 84.7 129 43.4
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 5.0e-15 84.3 129 43.4
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 6.6e-15 84.0 129 43.4
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 8.6e-15 83.6 129 42.6
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 8.6e-15 83.6 131 38.9
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 1.1e-14 83.2 126 43.7
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 1.5e-14 82.8 129 42.6
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 1.5e-14 82.8 129 41.9
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.9e-14 82.4 129 42.6
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 1.9e-14 82.4 129 42.6
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.9e-14 82.4 126 41.3
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.9e-14 82.4 126 41.3
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 1.9e-14 82.4 131 38.9
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 2.5e-14 82.0 129 41.1
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 3.3e-14 81.6 129 41.9
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 3.3e-14 81.6 129 41.1
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 5.5e-14 80.9 130 41.5
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 5.5e-14 80.9 123 41.5
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 5.5e-14 80.9 126 40.5
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.5e-14 80.9 126 40.5
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.5e-14 80.9 126 40.5
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.5e-14 80.9 126 40.5
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 7.2e-14 80.5 129 41.9
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 7.2e-14 80.5 129 38.8
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 9.5e-14 80.1 129 40.3
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 9.5e-14 80.1 129 40.3
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 1.2e-13 79.7 129 42.6
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 2.1e-13 79.0 129 41.9
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 2.1e-13 79.0 133 39.1
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 2.1e-13 79.0 126 39.7
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 2.8e-13 78.6 128 40.6
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 2.8e-13 78.6 130 40.8
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 2.8e-13 78.6 130 39.2
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 2.8e-13 78.6 128 41.4
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 3.6e-13 78.2 129 41.9
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 3.6e-13 78.2 129 41.9
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 4.7e-13 77.8 129 41.1
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 6.1e-13 77.4 126 40.5
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 1.0e-12 76.6 129 38.8
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 1.0e-12 76.6 133 38.3
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 1.0e-12 76.6 129 41.1
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 1.4e-12 76.3 107 43.9
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 1.4e-12 76.3 126 40.5
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.4e-12 76.3 129 40.3
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 1.4e-12 76.3 128 39.8
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 1.4e-12 76.3 127 41.7
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 1.4e-12 76.3 129 39.5
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.8e-12 75.9 129 40.3
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 2.3e-12 75.5 126 39.7
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 2.3e-12 75.5 126 39.7
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 2.3e-12 75.5 126 39.7
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 3.0e-12 75.1 126 40.5
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 3.0e-12 75.1 126 40.5
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 3.0e-12 75.1 127 39.4
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 4.0e-12 74.7 128 39.8
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 4.0e-12 74.7 128 39.8
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 4.0e-12 74.7 128 39.8
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 4.0e-12 74.7 128 39.8
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.0e-12 74.7 146 35.6
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 5.2e-12 74.3 129 39.5
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 6.8e-12 73.9 129 39.5
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 6.8e-12 73.9 126 37.3
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 1.2e-11 73.2 130 38.5
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.2e-11 73.2 129 41.1
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.5e-11 72.8 129 38.8
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 1.5e-11 72.8 129 38.8
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 2.0e-11 72.4 126 38.9
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 3.4e-11 71.6 129 38.0
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 3.4e-11 71.6 132 34.8
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 3.4e-11 71.6 130 37.7
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 5.7e-11 70.9 132 34.8
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 5.7e-11 70.9 129 36.4
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 5.7e-11 70.9 129 38.8
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 9.8e-11 70.1 126 36.5
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 9.8e-11 70.1 129 34.9
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.7e-10 69.3 120 39.2
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 2.2e-10 68.9 130 35.4
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 2.8e-10 68.6 127 37.0
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 4.9e-10 67.8 129 36.4
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 6.3e-10 67.4 130 36.9
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 8.3e-10 67.0 130 33.8
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 1.8e-09 65.9 129 34.9
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 1.8e-09 65.9 129 37.2
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 2.4e-09 65.5 127 37.0
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 3.1e-09 65.1 128 33.6
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 7.0e-09 63.9 130 35.4
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 7.0e-09 63.9 124 37.9
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 1.2e-08 63.2 126 36.5
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 1.3e-07 59.7 91 42.9
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 1.7e-07 59.3 117 33.3
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 3.9e-07 58.2 115 37.4
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 5.0e-07 57.8 41 73.2
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 1.5e-06 56.2 32 81.2


User provided reference genes

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