Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 4.0e-122 441.4 222 100.0
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 1.7e-75 286.6 230 65.7
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.3e-72 276.9 224 67.4
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.7e-72 276.6 231 62.8
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 2.9e-72 275.8 231 61.9
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 2.7e-70 269.2 227 62.6
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.8e-69 266.5 229 61.6
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 6.8e-69 264.6 194 67.5
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 1.2e-68 263.8 237 62.4
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 2.6e-68 262.7 219 64.8
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 2.6e-68 262.7 235 62.1
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 3.4e-68 262.3 226 62.4
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 9.8e-68 260.8 218 63.8
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 3.7e-67 258.8 200 65.0
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 4.8e-67 258.5 237 60.8
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 8.3e-67 257.7 236 57.2
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.1e-66 257.3 241 59.8
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 1.8e-66 256.5 234 56.8
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 2.4e-66 256.1 226 61.1
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 3.1e-66 255.8 218 63.3
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 4.1e-66 255.4 225 57.8
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 5.4e-66 255.0 207 63.8
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 7.0e-66 254.6 232 59.1
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.2e-65 253.8 213 62.9
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 5.9e-65 251.5 216 64.8
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 7.7e-65 251.1 213 61.5
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 1.0e-64 250.8 235 57.9
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 1.7e-64 250.0 205 62.4
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.7e-64 250.0 225 60.4
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.7e-64 250.0 218 60.6
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 2.2e-64 249.6 224 58.9
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 2.2e-64 249.6 221 59.3
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 2.2e-64 249.6 213 62.4
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 8.5e-64 247.7 220 60.5
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 8.5e-64 247.7 196 64.3
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.1e-63 247.3 244 57.0
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 1.1e-63 247.3 249 55.0
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 1.5e-63 246.9 238 60.5
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.9e-63 246.5 168 72.0
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 3.2e-63 245.7 232 59.5
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 3.2e-63 245.7 188 67.6
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 3.2e-63 245.7 224 58.5
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 4.2e-63 245.4 244 56.6
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 4.2e-63 245.4 222 61.7
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 7.2e-63 244.6 217 59.4
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 9.5e-63 244.2 216 60.2
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 1.2e-62 243.8 160 73.8
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 1.2e-62 243.8 150 75.3
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 1.2e-62 243.8 225 58.7
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 2.1e-62 243.0 153 75.2
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 2.1e-62 243.0 209 62.2
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 2.1e-62 243.0 209 62.2
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 2.7e-62 242.7 216 60.6
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 4.7e-62 241.9 245 55.1
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 6.1e-62 241.5 224 58.0
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 8.0e-62 241.1 216 59.7
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 8.0e-62 241.1 207 63.8
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 8.0e-62 241.1 231 57.6
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.0e-61 240.7 172 68.0
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 1.4e-61 240.4 211 61.1
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.4e-61 240.4 189 66.7
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 1.4e-61 240.4 153 73.9
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.4e-61 240.4 209 62.2
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 1.8e-61 240.0 215 61.4
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 2.3e-61 239.6 220 59.5
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 2.3e-61 239.6 215 58.1
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.0e-61 239.2 215 61.4
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 3.0e-61 239.2 216 60.2
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 3.0e-61 239.2 216 60.2
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 4.0e-61 238.8 205 61.0
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 5.2e-61 238.4 189 64.6
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.2e-60 237.3 178 69.1
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 2.0e-60 236.5 171 65.5
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 2.0e-60 236.5 229 55.0
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 2.6e-60 236.1 216 59.3
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 2.6e-60 236.1 255 53.3
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 2.6e-60 236.1 233 58.4
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 4.4e-60 235.3 220 59.1
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.3e-59 233.8 229 58.1
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 2.2e-59 233.0 191 64.9
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 3.7e-59 232.3 214 60.3
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 6.3e-59 231.5 191 64.4
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 6.3e-59 231.5 274 50.7
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.4e-58 230.3 193 63.2
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 1.8e-58 229.9 197 62.4
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.1e-58 229.2 176 68.8
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 4.1e-58 228.8 191 64.4
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 9.2e-58 227.6 190 58.9
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 2.0e-57 226.5 191 63.9
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 4.5e-57 225.3 197 61.4
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 4.5e-57 225.3 197 61.4
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 4.5e-57 225.3 190 60.5
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.7e-56 223.4 210 57.1
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.7e-56 223.4 169 63.3
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.1e-55 220.7 168 62.5
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 1.2e-54 217.2 182 59.9
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 2.1e-54 216.5 226 54.9
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 2.1e-54 216.5 237 53.2
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 2.1e-54 216.5 213 57.7
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 4.0e-53 212.2 156 68.6
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 5.7e-52 208.4 225 53.3
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 1.7e-51 206.8 210 55.2
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 3.7e-51 205.7 148 68.9
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.2e-49 200.7 146 67.1
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 3.5e-49 199.1 229 52.0
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 7.8e-49 198.0 133 68.4
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 2.0e-44 183.3 230 49.1
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 2.6e-44 183.0 147 58.5
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 4.9e-43 178.7 136 58.8
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 2.4e-42 176.4 131 62.6
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 2.7e-41 172.9 128 65.6
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.9e-39 166.8 159 57.9
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 3.3e-39 166.0 134 56.0
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 5.6e-39 165.2 132 59.1
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 8.9e-37 157.9 173 48.0
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 6.4e-35 151.8 153 53.6
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.4e-34 150.6 187 49.7
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 1.4e-34 150.6 188 45.2
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.3e-32 144.1 94 78.7
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 4.3e-31 139.0 93 74.2
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 3.1e-29 132.9 70 81.4
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 8.9e-29 131.3 141 53.2
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.8e-21 107.1 53 83.0
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 9.9e-20 101.3 126 45.2
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 6.4e-19 98.6 72 66.7
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 3.0e-16 89.7 132 37.1
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 6.6e-16 88.6 54 79.6
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.5e-15 87.4 118 49.2
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 3.1e-13 79.7 102 43.1
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 5.1e-08 62.4 36 72.2
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 3.3e-07 59.7 226 28.8
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 4.8e-06 55.8 138 29.7


User provided reference genes

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