Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 6.4e-64 247.3 128 100.0
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 3.2e-39 165.2 98 85.7
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.1e-36 156.8 96 81.2
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 3.3e-36 155.2 96 81.2
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 5.7e-36 154.5 99 78.8
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 1.7e-35 152.9 96 81.2
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 6.3e-35 151.0 95 80.0
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 1.1e-34 150.2 96 80.2
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 1.8e-34 149.4 96 77.1
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.8e-34 149.4 95 77.9
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.8e-34 149.4 95 77.9
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 1.8e-34 149.4 98 77.6
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 1.8e-34 149.4 103 76.7
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 3.1e-34 148.7 97 76.3
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 3.1e-34 148.7 98 75.5
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.1e-34 148.3 95 76.8
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 6.9e-34 147.5 98 75.5
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 1.2e-33 146.7 109 70.6
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 1.5e-33 146.4 96 76.0
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 2.6e-33 145.6 97 75.3
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 3.4e-33 145.2 98 75.5
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 3.4e-33 145.2 98 75.5
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 5.9e-33 144.4 121 65.3
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 1.3e-32 143.3 96 75.0
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 2.9e-32 142.1 95 76.8
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 2.9e-32 142.1 95 74.7
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 3.8e-32 141.7 131 61.8
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 3.8e-32 141.7 97 74.2
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.0e-32 141.4 97 74.2
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.0e-32 141.4 97 74.2
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 5.0e-32 141.4 97 73.2
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 5.0e-32 141.4 97 73.2
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 6.5e-32 141.0 97 73.2
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 8.5e-32 140.6 134 61.9
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.1e-31 140.2 106 68.9
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 1.1e-31 140.2 97 71.1
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 1.4e-31 139.8 97 74.2
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 2.5e-31 139.0 89 76.4
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 3.2e-31 138.7 97 72.2
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 3.2e-31 138.7 97 73.2
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 3.2e-31 138.7 97 73.2
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 4.2e-31 138.3 149 57.7
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 5.5e-31 137.9 95 76.8
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 9.4e-31 137.1 89 75.3
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 1.2e-30 136.7 95 75.8
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.6e-30 136.3 97 72.2
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 2.1e-30 136.0 99 70.7
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 2.7e-30 135.6 96 71.9
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 6.1e-30 134.4 99 68.7
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 6.1e-30 134.4 99 68.7
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 7.9e-30 134.0 96 70.8
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 7.9e-30 134.0 96 70.8
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 1.0e-29 133.7 97 68.0
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 3.9e-29 131.7 97 68.0
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 5.1e-29 131.3 86 76.7
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 5.1e-29 131.3 97 67.0
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.1e-28 130.2 138 58.0
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 3.3e-28 128.6 115 63.5
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 3.3e-28 128.6 80 80.0
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 3.3e-28 128.6 96 62.5
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 9.7e-28 127.1 95 68.4
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 1.3e-27 126.7 96 67.7
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 2.2e-27 125.9 138 55.1
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 3.7e-27 125.2 131 55.0
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 3.7e-27 125.2 96 67.7
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 4.8e-27 124.8 86 72.1
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 6.3e-27 124.4 121 55.4
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 1.1e-26 123.6 96 66.7
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.1e-26 123.6 104 66.3
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 1.1e-26 123.6 101 68.3
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 1.8e-26 122.9 80 75.0
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 3.1e-26 122.1 85 74.1
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 3.1e-26 122.1 97 62.9
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 4.1e-26 121.7 96 65.6
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 5.3e-26 121.3 84 71.4
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 9.1e-26 120.6 96 64.6
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 1.5e-25 119.8 95 61.1
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 4.5e-25 118.2 88 63.6
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 7.7e-25 117.5 78 75.6
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 2.2e-24 115.9 85 70.6
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 2.2e-24 115.9 89 66.3
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 8.5e-24 114.0 91 58.2
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 8.0e-22 107.5 94 59.6
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 3.0e-21 105.5 93 61.3
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 5.2e-21 104.8 153 47.1
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 6.7e-21 104.4 82 63.4
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 8.8e-21 104.0 94 56.4
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 8.8e-21 104.0 94 56.4
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 8.8e-21 104.0 94 56.4
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 1.1e-20 103.6 104 59.6
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 1.5e-20 103.2 92 55.4
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 1.5e-20 103.2 92 55.4
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 2.0e-20 102.8 78 67.9
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 2.0e-20 102.8 78 67.9
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 9.7e-20 100.5 117 52.1
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 1.7e-19 99.8 124 54.8
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 1.7e-19 99.8 103 55.3
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 2.2e-19 99.4 87 69.0
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 2.2e-19 99.4 87 69.0
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 8.2e-19 97.4 109 49.5
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.0e-16 90.5 100 56.0
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 5.0e-16 88.2 86 62.8
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 6.5e-16 87.8 97 52.6
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 8.5e-16 87.4 80 58.8
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 1.1e-15 87.0 106 57.5
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 4.2e-15 85.1 106 47.2
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 1.2e-14 83.6 110 50.0
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 2.1e-14 82.8 86 60.5
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 1.0e-13 80.5 147 39.5
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 1.2e-12 77.0 66 60.6
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 3.4e-12 75.5 107 43.9
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 9.8e-12 73.9 75 53.3
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 2.8e-11 72.4 89 50.6
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 6.3e-11 71.2 50 64.0
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 8.3e-11 70.9 48 68.8
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 7.0e-10 67.8 87 46.0
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 4.5e-09 65.1 85 47.1
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 8.5e-08 60.8 59 55.9
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 2.5e-07 59.3 71 46.5
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 7.2e-07 57.8 114 40.4
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 9.4e-07 57.4 102 35.3
Phvul.010G138400 Phaseolus vulgaris HOM05D006504 ORTHO05D007867 1.6e-06 56.6 144 36.8
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 4.7e-06 55.1 57 43.9


User provided reference genes

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