Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 3.8e-145 518.1 252 100.0
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 1.8e-110 402.9 231 84.0
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 1.2e-109 400.2 234 80.3
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 1.5e-109 399.8 229 83.0
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 2.3e-105 386.0 234 80.3
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 5.1e-105 384.8 231 78.8
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 4.3e-104 381.7 230 80.0
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 4.3e-104 381.7 228 80.7
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 7.3e-104 380.9 234 76.9
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 3.6e-103 378.6 230 78.7
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 4.0e-102 375.2 229 78.6
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 6.9e-102 374.4 233 78.1
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 2.0e-101 372.9 230 77.4
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 2.6e-101 372.5 236 75.4
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 5.8e-101 371.3 228 78.1
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 9.9e-101 370.5 234 77.4
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.7e-100 369.8 229 76.4
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 8.4e-100 367.5 231 77.1
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.1e-99 367.1 231 77.1
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.4e-99 366.7 236 75.0
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.4e-99 366.7 237 75.1
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.4e-99 366.7 234 75.6
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 4.2e-99 365.2 236 73.3
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 5.4e-99 364.8 236 74.6
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 9.3e-99 364.0 230 75.7
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 2.7e-98 362.5 233 75.1
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 7.9e-98 360.9 233 73.4
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 1.3e-97 360.1 235 73.6
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.8e-97 359.8 228 75.0
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 3.0e-97 359.0 227 77.5
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.9e-97 358.6 238 69.7
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 3.9e-97 358.6 232 71.1
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 5.1e-97 358.2 231 71.9
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 8.7e-97 357.5 232 71.6
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.1e-96 357.1 239 73.6
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 1.1e-96 357.1 232 71.6
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 1.9e-96 356.3 230 73.9
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 2.5e-96 355.9 232 70.7
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.3e-96 355.5 224 73.2
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 4.3e-96 355.1 232 70.7
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 4.3e-96 355.1 231 75.3
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 5.6e-96 354.8 230 74.8
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 5.6e-96 354.8 235 71.1
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 7.4e-96 354.4 227 73.1
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 7.4e-96 354.4 231 72.3
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 7.4e-96 354.4 229 75.1
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 1.3e-95 353.6 237 70.0
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 2.8e-95 352.4 229 74.2
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 3.7e-95 352.1 234 73.1
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 4.8e-95 351.7 231 72.3
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 8.1e-95 350.9 231 71.9
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 8.1e-95 350.9 228 75.0
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 6.9e-94 347.8 231 71.9
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 9.0e-94 347.4 233 70.4
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 1.2e-93 347.1 231 72.3
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 4.5e-93 345.1 236 72.5
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 7.6e-93 344.4 238 71.4
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 7.6e-93 344.4 229 70.3
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 9.9e-93 344.0 228 71.9
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 9.9e-93 344.0 230 73.9
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 1.3e-92 343.6 228 72.4
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 2.2e-92 342.8 232 70.3
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 2.2e-92 342.8 233 68.7
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 3.8e-92 342.0 234 68.4
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.8e-92 342.0 243 71.2
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 6.4e-92 341.3 230 69.1
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 8.4e-92 340.9 233 72.1
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.5e-91 339.3 223 72.6
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 2.5e-91 339.3 233 67.8
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.2e-91 339.0 228 71.5
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 5.5e-91 338.2 228 71.1
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 5.5e-91 338.2 230 68.7
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 7.1e-91 337.8 235 66.8
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 1.2e-90 337.0 233 67.8
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 1.6e-90 336.7 233 67.8
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 3.5e-90 335.5 228 69.7
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.3e-89 333.6 223 71.3
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 3.0e-89 332.4 233 67.0
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.9e-88 329.7 233 70.0
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 3.3e-88 328.9 228 68.9
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 1.3e-87 327.0 230 67.0
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 1.2e-85 320.5 235 63.8
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 3.8e-84 315.5 259 59.8
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 3.8e-84 315.5 231 63.6
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 1.9e-83 313.2 231 64.9
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 2.5e-83 312.8 228 64.9
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 1.6e-82 310.1 225 66.2
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 7.9e-82 307.8 243 64.2
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 2.2e-79 299.7 231 61.5
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 4.1e-78 295.4 231 60.2
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 5.0e-76 288.5 195 68.7
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 4.2e-75 285.4 192 69.3
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 6.9e-70 268.1 230 53.0
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 5.0e-68 261.9 230 55.7
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 1.9e-67 260.0 229 55.9
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 5.5e-67 258.5 238 54.2
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 9.4e-67 257.7 231 54.5
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.6e-66 256.9 230 54.8
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.6e-66 256.9 230 54.8
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 6.1e-66 255.0 230 53.9
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 7.9e-66 254.6 229 54.6
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 7.9e-66 254.6 229 55.0
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 7.9e-66 254.6 229 54.1
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 2.3e-65 253.1 226 55.3
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 8.8e-65 251.1 231 52.8
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 2.0e-64 250.0 227 52.4
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 3.3e-64 249.2 231 53.2
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 3.3e-64 249.2 203 65.5
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 5.7e-64 248.4 229 54.1
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 7.4e-64 248.1 230 53.9
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 9.7e-64 247.7 230 53.9
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 5.3e-62 241.9 236 50.4
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 4.5e-61 238.8 229 52.0
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 3.8e-60 235.7 229 48.0
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 3.8e-52 209.1 231 49.4
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 5.2e-49 198.7 238 43.3
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.7e-47 193.7 235 41.7
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 9.1e-46 188.0 225 44.9
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 5.9e-45 185.3 175 49.7
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 2.3e-41 173.3 230 39.6
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 8.8e-41 171.4 188 45.2
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 2.9e-36 156.4 232 43.5
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 3.8e-36 156.0 179 46.4
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 6.6e-36 155.2 176 45.5
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 8.6e-36 154.8 181 47.5
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 4.2e-35 152.5 219 42.9
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 7.2e-35 151.8 232 42.2
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 6.1e-34 148.7 179 46.4
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-33 147.5 179 45.3
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 2.3e-33 146.7 180 44.4
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.2e-32 144.4 171 46.2
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 2.6e-32 143.3 180 43.9
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 5.4e-30 135.6 89 74.2
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 1.2e-29 134.4 144 47.9
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.7e-28 130.6 137 46.7
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.3e-28 130.2 233 38.2
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 1.9e-27 127.1 158 43.7
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 1.2e-26 124.4 144 47.2
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-22 110.2 179 38.5
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-22 110.2 179 38.5
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 9.2e-22 108.2 190 36.3
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 1.2e-21 107.8 173 36.4
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 3.1e-17 93.2 64 60.9
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 3.1e-17 93.2 64 60.9
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 3.4e-16 89.7 93 50.5
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 7.5e-16 88.6 69 63.8
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.1e-14 84.7 118 42.4
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 8.9e-09 65.1 60 55.0


User provided reference genes

Program Settings