Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A323G78 Lonicera japonica HOM05D000126 ORTHO05D022446 1.7e-39 165.6 88 100.0
Lj5A322T70 Lonicera japonica HOM05D000126 ORTHO05D022446 5.6e-27 124.0 113 67.3
Lj3A808T90 Lonicera japonica HOM05D000126 ORTHO05D000085 5.7e-11 70.9 47 80.9
Lj5A323T75 Lonicera japonica HOM05D000126 ORTHO05D000085 2.8e-10 68.6 46 80.4
Lj3C808T15 Lonicera japonica HOM05D000126 ORTHO05D000085 8.2e-10 67.0 43 81.4
Lj5C324T1 Lonicera japonica HOM05D000126 ORTHO05D000085 1.1e-09 66.6 44 81.8
Lj5A322T69 Lonicera japonica HOM05D000126 ORTHO05D000085 2.4e-09 65.5 44 79.5
Lj5A323T73 Lonicera japonica HOM05D000126 ORTHO05D000085 4.1e-09 64.7 44 79.5
Lj5A323T74 Lonicera japonica HOM05D000126 ORTHO05D000085 2.0e-08 62.4 44 75.0
CSS0011492 Camellia sinensis var. sinensis HOM05D000126 ORTHO05D000085 3.4e-08 61.6 48 68.8
Lj5C324T3 Lonicera japonica HOM05D000126 ORTHO05D000085 7.7e-08 60.5 41 75.6
Hma1.2p1_2624F.1_g325623 Hydrangea macrophylla HOM05D000126 ORTHO05D000085 1.0e-07 60.1 44 72.7
CSS0038975 Camellia sinensis var. sinensis HOM05D000126 ORTHO05D000085 2.9e-07 58.5 46 67.4
Sabra04G0061600 Salix brachista HOM05D000126 ORTHO05D000085 3.8e-07 58.2 43 69.8
Nitab4.5_0000339g0010 Nicotiana tabacum HOM05D000126 ORTHO05D000085 5.0e-07 57.8 46 67.4
Prupe.3G273900 Prunus persica HOM05D000126 ORTHO05D000085 5.0e-07 57.8 43 72.1
Lj2g0013368 Lotus japonicus HOM05D000126 ORTHO05D000085 6.5e-07 57.4 55 58.2
Manes.11G055440 Manihot esculenta HOM05D000126 ORTHO05D000085 6.5e-07 57.4 85 49.4
Manes.11G060207 Manihot esculenta HOM05D000126 ORTHO05D000085 6.5e-07 57.4 85 49.4
Manes.17G025400 Manihot esculenta HOM05D000126 ORTHO05D000085 6.5e-07 57.4 85 49.4
HanXRQChr03g0082171 Helianthus annuus HOM05D000126 ORTHO05D000085 8.5e-07 57.0 41 73.2
Hma1.2p1_0349F.1_g131990 Hydrangea macrophylla HOM05D000126 ORTHO05D000085 1.1e-06 56.6 41 73.2
Hma1.2p1_0589F.1_g184850 Hydrangea macrophylla HOM05D000126 ORTHO05D000085 1.1e-06 56.6 41 73.2
Potri.004G091250 Populus trichocarpa HOM05D000126 ORTHO05D022446 1.1e-06 56.6 54 57.4
CAN.G58.30 Capsicum annuum HOM05D000126 ORTHO05D000085 1.4e-06 56.2 46 65.2
Ciclev10011449m.g Citrus clementina HOM05D000126 ORTHO05D000085 1.4e-06 56.2 36 72.2
Potri.004G012601 Populus trichocarpa HOM05D000126 ORTHO05D000085 1.4e-06 56.2 50 58.0
Potri.004G012700 Populus trichocarpa HOM05D000126 ORTHO05D000085 1.4e-06 56.2 50 58.0
Actinidia36043 Actinidia chinensis HOM05D000126 ORTHO05D000085 2.5e-06 55.5 44 68.2
QL12p002863 Quercus lobata HOM05D000126 ORTHO05D000085 2.5e-06 55.5 56 55.4
CANSAT64G0860 Cannabis sativa HOM05D000126 ORTHO05D000085 3.2e-06 55.1 44 70.5
Ciclev10011474m.g Citrus clementina HOM05D000126 ORTHO05D000085 3.2e-06 55.1 36 69.4
Potri.004G091500 Populus trichocarpa HOM05D000126 ORTHO05D000085 3.2e-06 55.1 54 55.6
QL04p003614 Quercus lobata HOM05D003599 ORTHO05D004221 3.2e-06 55.1 39 74.4
Ciclev10013370m.g Citrus clementina HOM05D000126 ORTHO05D000085 4.2e-06 54.7 58 55.2
Eucgr.I01906 Eucalyptus grandis HOM05D000126 ORTHO05D000085 4.2e-06 54.7 57 54.4
MD09G1043700 Malus domestica HOM05D000126 ORTHO05D000085 4.2e-06 54.7 42 69.0
MD17G1045500 Malus domestica HOM05D000126 ORTHO05D000085 4.2e-06 54.7 40 72.5
ECA240G0641 Erigeron canadensis HOM05D000126 ORTHO05D000085 5.5e-06 54.3 58 58.6
Eucgr.J02150 Eucalyptus grandis HOM05D000126 ORTHO05D000085 5.5e-06 54.3 47 57.4
Potri.004G012500 Populus trichocarpa HOM05D000126 ORTHO05D000085 5.5e-06 54.3 50 56.0
PGSC0003DMG400031271 Solanum tuberosum HOM05D000126 ORTHO05D000085 5.5e-06 54.3 42 69.0
CSS0012124 Camellia sinensis var. sinensis HOM05D000126 ORTHO05D000085 7.2e-06 53.9 43 65.1
CANSAT64G1097 Cannabis sativa HOM05D000126 ORTHO05D000085 7.2e-06 53.9 44 68.2
CANSAT64G1110 Cannabis sativa HOM05D000126 ORTHO05D000085 7.2e-06 53.9 44 68.2
Nitab4.5_0000530g0040 Nicotiana tabacum HOM05D000126 ORTHO05D000085 7.2e-06 53.9 42 69.0
Sabra04G0061500 Salix brachista HOM05D000126 ORTHO05D000085 7.2e-06 53.9 72 51.4
Solyc05g007470.4 Solanum lycopersicum HOM05D000126 ORTHO05D000085 7.2e-06 53.9 43 67.4
Sopen05g003350 Solanum pennellii HOM05D000126 ORTHO05D000085 7.2e-06 53.9 43 67.4
CAN.G954.24 Capsicum annuum HOM05D000126 ORTHO05D000085 9.4e-06 53.5 44 68.2
FvH4_6g49560 Fragaria vesca HOM05D000126 ORTHO05D000085 9.4e-06 53.5 40 70.0
FvH4_6g49580 Fragaria vesca HOM05D000126 ORTHO05D000085 9.4e-06 53.5 40 70.0
FAN02G1142 Fragaria x ananassa HOM05D000126 ORTHO05D000085 9.4e-06 53.5 40 70.0
FAN05G1478 Fragaria x ananassa HOM05D000126 ORTHO05D000085 9.4e-06 53.5 40 70.0
FAN09G1463 Fragaria x ananassa HOM05D000126 ORTHO05D000085 9.4e-06 53.5 40 70.0
FAN14G5505 Fragaria x ananassa HOM05D000126 ORTHO05D000085 9.4e-06 53.5 40 70.0
Gohir.D09G022100 Gossypium hirsutum HOM05D000126 ORTHO05D000085 9.4e-06 53.5 40 67.5


User provided reference genes

Program Settings