Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1534.6 752 100.0
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1244.2 766 81.3
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1231.1 769 80.5
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1228.8 769 80.4
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1208.7 764 78.9
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1191.8 783 77.1
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1182.9 762 76.1
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1182.2 766 77.0
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1181.8 791 76.4
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1177.9 763 76.1
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1176.4 763 76.3
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1175.2 763 76.1
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 0.0e+00 1172.1 764 76.4
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1170.2 763 75.8
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1167.1 762 75.9
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1166.8 767 75.7
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1161.0 754 77.3
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1159.1 764 75.4
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1156.7 770 74.9
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1148.3 778 74.3
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 0.0e+00 1140.2 751 76.3
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 0.0e+00 1133.2 764 74.3
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1123.2 758 72.7
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1114.8 759 72.9
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1109.7 759 72.3
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1107.4 754 73.6
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 0.0e+00 1103.2 759 73.0
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1101.3 759 72.5
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1099.0 772 71.5
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1095.9 769 72.2
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 0.0e+00 1095.5 771 71.9
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1095.5 759 72.2
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1095.1 763 71.6
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 0.0e+00 1092.0 764 71.6
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1092.0 764 71.6
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1090.5 774 70.9
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1090.5 756 72.6
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1090.1 765 71.8
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1089.7 756 73.1
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1088.6 764 71.5
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1088.2 750 72.8
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1087.8 752 73.4
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1087.4 751 73.1
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1086.6 767 72.1
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1085.1 751 72.8
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1081.6 764 71.2
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1080.5 751 73.0
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1079.3 757 72.4
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1078.5 766 71.0
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 5.1e-312 1073.9 759 72.3
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 5.1e-312 1073.5 754 72.4
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 1.0e-310 1069.7 753 71.6
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.7e-310 1068.9 754 72.3
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 3.0e-310 1068.1 767 70.4
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 3.9e-310 1067.8 757 70.3
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 7.3e-309 1063.5 756 71.8
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 9.6e-309 1063.1 758 71.8
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 1.6e-308 1062.4 756 72.4
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 9.0e-307 1056.6 761 70.4
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 9.9e-306 1053.1 752 71.5
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.1e-303 1045.4 752 71.1
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 1.0e-302 1043.1 765 68.4
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.1e-301 1039.6 752 71.3
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 1.5e-301 1039.3 769 67.8
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 2.5e-301 1038.5 769 68.1
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.1e-300 1033.5 752 71.1
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 4.0e-299 1031.2 769 67.4
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.6e-298 1028.5 751 70.3
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 3.5e-295 1018.1 768 67.2
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.3e-294 1016.1 753 69.1
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 2.3e-294 1015.4 812 64.9
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.3e-293 1011.5 751 69.0
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 4.3e-293 1011.1 770 66.5
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 7.4e-293 1010.4 757 66.8
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 1.6e-292 1009.2 757 66.3
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 2.1e-292 1008.8 770 66.4
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.2e-292 1007.3 752 69.4
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 8.2e-292 1006.9 772 65.8
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 754 67.8
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 2.4e-291 1005.4 757 67.0
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 2.4e-291 1005.4 750 67.6
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 6.9e-291 1003.8 795 65.2
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.2e-290 1003.0 759 66.3
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 2.6e-290 1001.9 753 67.3
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 5.8e-290 1000.7 753 67.6
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.7e-289 999.2 744 67.5
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 8.4e-289 996.9 748 67.4
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 8.4e-289 996.9 768 65.5
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.9e-288 995.7 750 67.1
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.9e-288 995.7 752 66.8
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 1.9e-288 995.7 753 66.3
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 7.1e-288 993.8 750 67.3
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 9.3e-288 993.4 801 62.9
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 9.3e-288 993.4 770 64.7
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 1.6e-287 992.6 756 67.1
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 1.6e-287 992.6 751 67.0
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.6e-287 992.6 769 65.1
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 6.0e-287 990.7 753 66.0
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 7.9e-287 990.3 756 65.6
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 1.8e-286 989.2 750 67.1
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 3.0e-286 988.4 755 66.6
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 6.7e-286 987.3 720 71.4
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 6.7e-286 987.3 757 66.3
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 8.7e-286 986.9 756 66.7
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 8.7e-286 986.9 765 65.5
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 1.1e-285 986.5 758 66.0
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.4e-283 978.8 765 66.0
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 2.9e-281 971.8 759 66.0
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 8.5e-281 970.3 724 69.9
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.1e-280 969.9 763 64.2
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.1e-280 969.9 755 66.2
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.5e-280 968.8 763 64.2
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 3.2e-280 968.4 765 63.7
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 4.2e-280 968.0 766 63.8
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 6.1e-279 964.1 714 70.0
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.8e-278 962.6 748 65.0
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 3.0e-278 961.8 763 63.4
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.5e-277 959.5 747 64.4
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 4.3e-277 958.0 765 63.5
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 4.1e-275 951.4 768 62.2
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 2.9e-273 945.3 760 65.5
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 1.5e-269 932.9 767 62.2
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 4.1e-267 924.9 763 62.1
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 9.4e-264 913.7 764 61.8
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 4.7e-263 911.4 766 60.2
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 3.9e-262 908.3 764 62.7
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.1e-261 906.7 760 62.4
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 2.2e-260 902.5 752 62.6
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 6.3e-260 901.0 764 60.7
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 3.1e-259 898.7 868 58.2
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 7.7e-258 894.0 763 60.4
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.9e-256 889.4 759 59.7
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.4e-246 856.7 742 60.6
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.3e-244 850.1 757 61.2
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 4.8e-244 848.2 757 61.0
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.1e-232 810.4 696 62.5
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.7e-220 770.0 663 61.1
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.4e-219 766.9 737 55.4
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.1e-202 709.9 752 52.7
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 3.6e-191 672.5 783 46.1
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 3.1e-182 642.9 749 46.5
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 4.2e-179 632.5 789 44.2
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.0e-177 626.3 762 45.0
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.4e-174 617.5 787 45.4
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 5.5e-171 605.5 436 69.0
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 1.4e-161 574.3 406 70.9
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 3.7e-151 539.7 743 41.9
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 4.1e-150 536.2 395 67.6
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 4.1e-150 536.2 395 67.6
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.2e-148 530.4 397 66.8
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 2.2e-135 487.3 561 46.0
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 5.0e-132 476.1 273 84.2
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 8.6e-124 448.7 427 56.2
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 5.9e-117 426.0 256 78.9
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.1e-115 421.8 421 51.3
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 3.9e-100 370.2 749 33.5
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.9e-80 302.4 267 59.2
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 5.4e-70 270.0 760 29.3
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 4.5e-64 250.4 276 50.0
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.5e-56 225.3 175 62.9
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 7.9e-53 213.0 142 71.8
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.2e-42 178.3 153 62.1
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.4e-38 165.6 83 83.1
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 7.2e-30 136.7 65 87.7
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.6e-24 119.0 130 44.6
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.0e-23 116.3 129 44.2
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 1.7e-18 99.0 89 53.9
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 2.3e-12 78.6 103 41.7
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.2e-11 76.3 67 58.2
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 3.7e-10 71.2 46 71.7
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.6e-08 65.9 39 71.8


User provided reference genes

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