Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 1.4e-93 346.3 178 100.0
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 5.4e-77 291.2 212 74.5
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 1.3e-75 286.6 212 73.6
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 3.9e-75 285.0 212 73.6
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 5.1e-75 284.6 211 72.5
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 2.5e-74 282.3 212 73.6
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 2.1e-73 279.3 216 73.1
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 2.8e-73 278.9 208 72.6
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 4.7e-73 278.1 204 74.0
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 6.2e-73 277.7 204 73.5
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 8.1e-73 277.3 208 72.1
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.1e-72 276.9 205 73.2
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.1e-72 276.9 205 73.2
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 1.4e-72 276.6 212 72.2
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 1.4e-72 276.6 204 73.5
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 1.4e-72 276.6 204 73.5
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 1.8e-72 276.2 205 71.7
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 2.3e-72 275.8 204 72.5
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 2.3e-72 275.8 207 72.5
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 3.1e-72 275.4 212 72.6
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 3.1e-72 275.4 207 73.9
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 4.0e-72 275.0 212 72.6
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 4.0e-72 275.0 207 72.0
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 5.2e-72 274.6 207 71.0
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 5.2e-72 274.6 204 72.5
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 5.2e-72 274.6 204 72.5
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 5.2e-72 274.6 207 72.9
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 6.8e-72 274.2 208 72.1
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 6.8e-72 274.2 205 72.2
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 1.2e-71 273.5 207 72.0
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 1.2e-71 273.5 208 72.1
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 2.6e-71 272.3 208 72.6
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 3.4e-71 271.9 204 72.5
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 3.4e-71 271.9 204 72.1
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 9.9e-71 270.4 207 70.5
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 1.3e-70 270.0 207 71.5
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 1.7e-70 269.6 204 72.1
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 2.9e-70 268.9 217 70.0
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 2.9e-70 268.9 209 71.8
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 3.8e-70 268.5 212 68.9
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 4.9e-70 268.1 204 71.1
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 4.9e-70 268.1 204 71.1
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 6.4e-70 267.7 207 68.6
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 6.4e-70 267.7 207 68.1
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 6.4e-70 267.7 211 68.7
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 8.4e-70 267.3 207 70.5
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 1.4e-69 266.5 204 72.1
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 1.4e-69 266.5 209 68.4
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 1.4e-69 266.5 208 69.2
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 1.9e-69 266.2 207 70.5
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 2.4e-69 265.8 207 68.6
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 2.4e-69 265.8 207 69.6
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 2.4e-69 265.8 208 69.2
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 3.2e-69 265.4 207 69.1
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 7.1e-69 264.2 207 67.6
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 7.1e-69 264.2 207 68.1
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 7.1e-69 264.2 207 68.6
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 7.1e-69 264.2 204 71.1
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 7.1e-69 264.2 181 77.9
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 7.1e-69 264.2 209 69.9
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 7.1e-69 264.2 207 69.6
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 9.2e-69 263.8 207 70.0
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 1.2e-68 263.5 207 68.6
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.2e-68 263.5 204 70.6
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 1.6e-68 263.1 212 69.3
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 1.6e-68 263.1 207 69.1
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 1.6e-68 263.1 204 70.1
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 2.1e-68 262.7 207 67.6
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 2.7e-68 262.3 207 67.6
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 3.5e-68 261.9 206 67.5
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 1.3e-67 260.0 207 66.7
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 1.3e-67 260.0 207 67.1
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 1.3e-67 260.0 207 67.1
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 2.3e-67 259.2 207 67.1
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 6.6e-67 257.7 207 66.7
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 7.3e-66 254.2 211 67.3
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 9.6e-66 253.8 210 66.7
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.1e-64 250.4 212 67.0
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 9.0e-64 247.3 207 67.1
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 1.5e-63 246.5 204 67.2
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 9.9e-63 243.8 207 65.7
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 6.4e-62 241.1 204 64.2
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 3.2e-61 238.8 204 62.7
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 4.2e-61 238.4 187 69.5
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 1.6e-60 236.5 193 68.9
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 2.1e-60 236.1 203 63.5
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 2.7e-60 235.7 200 64.0
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 3.5e-60 235.3 193 67.9
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 3.5e-60 235.3 278 53.6
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 1.9e-58 229.6 204 61.3
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 2.8e-57 225.7 192 65.1
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 2.8e-57 225.7 204 62.3
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.1e-56 223.8 208 59.6
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 1.1e-56 223.8 207 58.0
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 1.8e-56 223.0 212 61.8
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 4.0e-56 221.9 189 65.1
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.2e-55 220.3 204 58.8
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 2.2e-54 216.1 299 46.8
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 6.4e-54 214.5 224 59.4
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 8.4e-54 214.2 207 62.8
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 3.5e-52 208.8 120 88.3
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 4.6e-52 208.4 208 59.6
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 1.9e-50 203.0 121 81.0
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 1.3e-49 200.3 120 83.3
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 1.8e-48 196.4 172 61.6
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 1.8e-48 196.4 123 77.2
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 6.9e-48 194.5 120 80.8
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 5.5e-45 184.9 205 55.1
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 7.1e-45 184.5 212 50.5
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 1.2e-44 183.7 204 53.4
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 1.9e-42 176.4 184 57.1
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 5.6e-42 174.9 161 62.1
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 2.1e-41 172.9 105 81.0
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 4.0e-40 168.7 140 67.1
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 1.7e-38 163.3 176 58.0
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 9.7e-34 147.5 146 52.1
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 1.1e-29 134.0 85 80.0
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 1.2e-28 130.6 128 55.5
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 4.7e-20 102.1 81 69.1
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 6.7e-19 98.2 48 95.8
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 1.5e-18 97.1 63 73.0
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 1.5e-18 97.1 121 48.8
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 4.4e-18 95.5 80 63.8
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 1.7e-17 93.6 56 78.6
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 1.5e-15 87.0 129 47.3
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 2.5e-13 79.7 177 38.4
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 2.1e-12 76.6 59 69.5
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 4.7e-12 75.5 144 40.3
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 4.8e-09 65.5 37 86.5
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 2.6e-07 59.7 210 25.2
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 2.9e-06 56.2 200 24.5


User provided reference genes

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