Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 2.0e-28 128.3 60 100.0
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 2.3e-19 98.2 48 95.8
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 1.6e-17 92.0 49 87.8
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 1.6e-17 92.0 49 87.8
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 2.8e-17 91.3 49 85.7
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 2.8e-17 91.3 49 87.8
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 2.8e-17 91.3 49 87.8
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 2.8e-17 91.3 49 87.8
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 2.8e-17 91.3 49 87.8
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 3.6e-17 90.9 48 91.7
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 4.7e-17 90.5 49 85.7
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 4.7e-17 90.5 49 85.7
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 8.1e-17 89.7 48 85.4
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 1.1e-16 89.4 48 87.5
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 2.3e-16 88.2 48 87.5
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 2.3e-16 88.2 48 83.3
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 2.3e-16 88.2 47 87.2
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 3.1e-16 87.8 49 83.7
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 3.1e-16 87.8 48 81.2
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 3.1e-16 87.8 48 85.4
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 5.2e-16 87.0 48 81.2
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 5.2e-16 87.0 48 85.4
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 5.2e-16 87.0 49 83.7
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 5.2e-16 87.0 57 75.4
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 6.8e-16 86.7 48 83.3
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 8.9e-16 86.3 48 83.3
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 8.9e-16 86.3 48 81.2
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 1.2e-15 85.9 48 83.3
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 1.2e-15 85.9 48 83.3
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 1.5e-15 85.5 49 79.6
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 1.5e-15 85.5 48 83.3
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 1.5e-15 85.5 48 79.2
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 1.5e-15 85.5 48 81.2
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 2.0e-15 85.1 52 76.9
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 2.6e-15 84.7 48 81.2
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 2.6e-15 84.7 48 83.3
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 2.6e-15 84.7 48 79.2
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 3.4e-15 84.3 48 79.2
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 3.4e-15 84.3 46 84.8
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 3.4e-15 84.3 48 81.2
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 3.4e-15 84.3 48 83.3
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 3.4e-15 84.3 49 81.6
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 4.4e-15 84.0 52 82.7
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 4.4e-15 84.0 48 83.3
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 4.4e-15 84.0 48 81.2
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 4.4e-15 84.0 48 83.3
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 4.4e-15 84.0 48 81.2
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 4.4e-15 84.0 49 79.6
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 4.4e-15 84.0 48 81.2
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 4.4e-15 84.0 49 79.6
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 5.8e-15 83.6 47 83.0
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 5.8e-15 83.6 48 81.2
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 5.8e-15 83.6 49 75.5
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 7.5e-15 83.2 48 83.3
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 7.5e-15 83.2 48 81.2
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 7.5e-15 83.2 48 83.3
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 7.5e-15 83.2 48 81.2
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 9.8e-15 82.8 49 77.6
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 9.8e-15 82.8 46 82.6
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 9.8e-15 82.8 48 75.0
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 9.8e-15 82.8 48 77.1
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.3e-14 82.4 48 79.2
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 1.7e-14 82.0 49 79.6
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 1.7e-14 82.0 49 79.6
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 1.7e-14 82.0 49 79.6
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 1.7e-14 82.0 49 75.5
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 1.7e-14 82.0 46 78.3
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 2.2e-14 81.6 46 80.4
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 2.2e-14 81.6 45 82.2
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 2.9e-14 81.3 49 77.6
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 3.7e-14 80.9 49 75.5
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 3.7e-14 80.9 48 79.2
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 3.7e-14 80.9 48 79.2
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 3.7e-14 80.9 48 79.2
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 4.9e-14 80.5 49 73.5
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 4.9e-14 80.5 49 73.5
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 4.9e-14 80.5 49 75.5
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 4.9e-14 80.5 46 80.4
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 4.9e-14 80.5 46 82.6
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 6.4e-14 80.1 46 78.3
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 6.4e-14 80.1 48 75.0
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 8.3e-14 79.7 48 79.2
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 8.3e-14 79.7 49 73.5
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 8.3e-14 79.7 49 71.4
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 1.4e-13 79.0 48 72.9
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 1.4e-13 79.0 48 75.0
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 1.9e-13 78.6 48 79.2
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 1.9e-13 78.6 48 79.2
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 2.4e-13 78.2 49 71.4
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 3.2e-13 77.8 49 73.5
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 3.2e-13 77.8 49 73.5
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 4.1e-13 77.4 59 67.8
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 9.2e-13 76.3 49 71.4
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 9.2e-13 76.3 49 71.4
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 1.6e-12 75.5 49 71.4
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 1.6e-12 75.5 49 71.4
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 1.6e-12 75.5 49 65.3
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 1.6e-12 75.5 49 65.3
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 2.1e-12 75.1 57 66.7
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 2.1e-12 75.1 49 69.4
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 2.7e-12 74.7 48 66.7
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 1.0e-11 72.8 48 72.9
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 1.0e-11 72.8 42 81.0
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 1.3e-11 72.4 49 67.3
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 1.3e-11 72.4 49 63.3
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 1.7e-11 72.0 58 65.5
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 6.6e-11 70.1 49 63.3
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 1.1e-10 69.3 51 66.7
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.9e-10 68.6 49 63.3
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 2.5e-10 68.2 49 71.4
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 3.3e-10 67.8 48 68.8
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 9.5e-10 66.2 40 70.0
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 9.5e-10 66.2 42 69.0
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 9.5e-10 66.2 49 63.3
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 6.2e-09 63.5 48 64.6
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 6.2e-09 63.5 49 63.3
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 6.8e-08 60.1 51 56.9
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 8.9e-08 59.7 46 56.5
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 4.4e-07 57.4 64 46.9


User provided reference genes

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