Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 1.8e-187 659.1 333 100.0
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 1.5e-96 357.1 335 56.4
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 8.2e-95 351.3 333 56.2
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 9.4e-91 337.8 333 54.7
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.7e-90 336.3 340 54.4
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 2.7e-90 336.3 336 53.6
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 4.7e-90 335.5 333 53.2
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 6.1e-90 335.1 333 53.5
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.4e-89 334.0 333 53.8
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 5.7e-88 328.6 336 52.1
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 2.2e-87 326.6 335 53.1
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 4.8e-87 325.5 332 52.4
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 4.1e-86 322.4 334 53.6
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 4.1e-86 322.4 336 51.2
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.6e-85 320.5 345 52.8
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 2.0e-85 320.1 334 53.6
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.7e-85 319.7 345 52.8
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 3.5e-85 319.3 329 52.0
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.5e-85 318.9 329 52.9
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 4.5e-85 318.9 336 52.4
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 7.7e-85 318.2 341 52.8
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 1.0e-84 317.8 346 51.7
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.7e-84 317.0 341 52.8
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 1.7e-84 317.0 337 53.4
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.2e-84 316.6 329 52.6
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 2.2e-84 316.6 336 52.4
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 2.2e-84 316.6 337 53.4
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 5.0e-84 315.5 328 53.0
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 1.9e-83 313.5 335 51.6
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 1.9e-83 313.5 343 51.6
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 4.2e-83 312.4 331 50.2
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 5.5e-83 312.0 324 54.0
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 9.4e-83 311.2 329 51.4
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 4.7e-82 308.9 338 48.5
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 1.4e-81 307.4 338 50.6
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 2.3e-81 306.6 334 50.9
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 3.0e-81 306.2 339 49.0
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 8.8e-81 304.7 335 51.9
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 3.4e-80 302.8 333 52.0
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 1.3e-79 300.8 340 49.4
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 6.3e-79 298.5 333 50.2
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 8.3e-79 298.1 334 49.7
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 8.3e-79 298.1 333 49.5
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 5.4e-78 295.4 334 49.4
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 1.6e-77 293.9 337 49.3
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 1.6e-77 293.9 330 48.8
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 4.5e-77 292.4 339 46.9
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 4.5e-77 292.4 333 48.0
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 5.9e-77 292.0 334 48.2
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 5.9e-77 292.0 332 48.8
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 7.7e-77 291.6 340 50.3
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 7.7e-77 291.6 340 48.5
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 1.7e-76 290.4 334 50.6
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 5.0e-76 288.9 330 49.7
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 6.6e-76 288.5 330 47.6
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 8.6e-76 288.1 330 50.9
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 8.6e-76 288.1 330 50.9
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 1.5e-75 287.3 330 50.6
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 2.5e-75 286.6 330 49.4
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 2.5e-75 286.6 337 47.8
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 2.5e-75 286.6 336 48.2
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 3.3e-75 286.2 330 49.4
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 3.3e-75 286.2 341 48.4
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 5.5e-75 285.4 330 50.0
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 5.5e-75 285.4 331 47.4
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 7.2e-75 285.0 331 47.1
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 1.2e-74 284.3 343 46.9
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 1.2e-74 284.3 333 49.8
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 1.6e-74 283.9 338 46.7
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 1.6e-74 283.9 330 49.1
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.6e-74 283.9 330 49.7
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 1.6e-74 283.9 322 50.0
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 2.1e-74 283.5 330 49.1
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 2.1e-74 283.5 330 50.0
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.8e-74 283.1 329 48.9
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 2.8e-74 283.1 286 53.8
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 3.6e-74 282.7 330 49.4
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 4.7e-74 282.3 330 50.0
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.1e-74 282.0 329 48.6
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 6.1e-74 282.0 335 50.1
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 1.0e-73 281.2 330 49.4
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 1.4e-73 280.8 287 53.7
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 1.8e-73 280.4 360 45.8
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 3.0e-73 279.6 332 46.7
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 4.0e-73 279.3 330 47.9
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 6.8e-73 278.5 336 47.0
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.2e-72 277.7 329 48.9
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 1.2e-72 277.7 330 48.8
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 9.8e-72 274.6 185 71.9
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 2.8e-71 273.1 335 47.2
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 6.3e-71 271.9 336 46.7
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 8.3e-71 271.6 333 45.9
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 1.1e-70 271.2 335 45.4
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 1.1e-70 271.2 342 47.1
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 9.2e-70 268.1 193 67.4
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 1.2e-69 267.7 266 53.4
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 7.8e-69 265.0 356 44.7
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 1.3e-68 264.2 308 49.0
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 6.6e-68 261.9 186 68.8
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 7.3e-67 258.5 266 53.4
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 1.2e-66 257.7 335 44.8
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 2.1e-66 256.9 340 41.8
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 2.8e-66 256.5 186 68.3
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 1.0e-65 254.6 353 43.3
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 4.0e-65 252.7 333 43.8
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 1.2e-64 251.1 186 65.6
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 1.2e-64 251.1 339 43.4
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 3.4e-64 249.6 184 66.3
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 7.5e-64 248.4 341 43.4
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 9.8e-64 248.1 280 49.6
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 3.7e-63 246.1 187 64.2
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 4.9e-63 245.7 333 43.5
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 6.4e-63 245.4 186 63.4
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 2.4e-62 243.4 275 49.1
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 1.6e-61 240.7 189 60.8
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 2.3e-60 236.9 200 58.5
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 3.9e-60 236.1 325 41.5
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 5.0e-60 235.7 327 42.5
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.3e-57 226.9 275 46.2
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 2.2e-55 220.3 185 57.8
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.2e-55 220.3 317 43.5
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 4.6e-53 212.6 185 58.4
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.6e-50 203.0 162 63.0
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 5.2e-49 199.1 290 42.1
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 2.3e-36 157.1 335 30.4
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 2.5e-35 153.7 251 41.0
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 3.3e-35 153.3 251 40.6
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 4.3e-35 152.9 213 46.0
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.6e-35 152.5 114 66.7
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 7.3e-35 152.1 105 66.7
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 3.6e-34 149.8 97 71.1
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 1.1e-33 148.3 309 31.4
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 3.8e-31 139.8 351 28.2
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 8.4e-31 138.7 118 60.2
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 2.4e-30 137.1 116 60.3
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 1.2e-24 118.2 157 38.9
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 3.0e-20 103.6 88 58.0
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.6e-19 99.4 85 57.6
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.7e-18 96.7 120 40.8
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.7e-18 96.7 129 39.5
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.4e-16 90.1 69 69.6
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 1.0e-12 78.6 93 46.2
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 3.3e-11 73.6 198 25.3
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 2.8e-10 70.5 47 70.2
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 2.8e-10 70.5 86 41.9
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 1.1e-09 68.6 125 39.2
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 3.1e-09 67.0 87 46.0
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 1.2e-08 65.1 73 47.9
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.5e-06 57.4 44 56.8
arahy.Tifrunner.gnm1.ann1.ZRCJ38 Arachis hypogaea HOM05D004903 ORTHO05D005849 4.2e-06 56.6 65 49.2
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 4.2e-06 56.6 56 48.2


User provided reference genes

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