Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A287T4 Lonicera japonica HOM05D000073 ORTHO05D234516 2.0e-17 91.3 43 100.0
Ca_20587_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 8.4e-08 59.3 38 65.8
Medtr4g066330 Medicago truncatula HOM05D000073 ORTHO05D000033 1.1e-07 58.9 38 63.2
arahy.Tifrunner.gnm1.ann1.QTEF0E Arachis hypogaea HOM05D000073 ORTHO05D000033 1.4e-07 58.5 39 59.0
Psat7g214400 Pisum sativum HOM05D000073 ORTHO05D000033 1.4e-07 58.5 38 63.2
FAN21G2114 Fragaria x ananassa HOM05D000073 ORTHO05D000033 2.4e-07 57.8 38 60.5
arahy.Tifrunner.gnm1.ann1.R34KW1 Arachis hypogaea HOM05D000073 ORTHO05D000033 3.2e-07 57.4 38 57.9
TAR626G1805 Trochodendron aralioides HOM05D000073 ORTHO05D012321 3.2e-07 57.4 37 62.2
QL04p004148 Quercus lobata HOM05D000073 ORTHO05D000033 4.1e-07 57.0 36 66.7
FAN16G1872 Fragaria x ananassa HOM05D000073 ORTHO05D000033 5.4e-07 56.6 38 57.9
Lalb_Chr24g0396921 Lupinus albus HOM05D000073 ORTHO05D000033 5.4e-07 56.6 38 63.2
MBI04_g12748_MAGBIO Magnolia biondii HOM05D000073 ORTHO05D000033 5.4e-07 56.6 38 60.5
Nn2g15601 Nelumbo nucifera HOM05D000073 ORTHO05D000033 5.4e-07 56.6 36 61.1
TWI34G0009 Tripterygium wilfordii HOM05D000073 ORTHO05D000033 5.4e-07 56.6 38 63.2
TWI60G1378 Tripterygium wilfordii HOM05D000073 ORTHO05D000033 7.1e-07 56.2 38 63.2
FvH4_3g43501 Fragaria vesca HOM05D000073 ORTHO05D000033 9.2e-07 55.8 38 57.9
FAN11G2084 Fragaria x ananassa HOM05D000073 ORTHO05D000033 9.2e-07 55.8 38 57.9
Os04g0474800 Oryza sativa ssp. japonica HOM05D000073 ORTHO05D000033 9.2e-07 55.8 38 60.5
Os04g0474900 Oryza sativa ssp. japonica HOM05D000073 ORTHO05D000033 9.2e-07 55.8 38 60.5
Psat1g120160 Pisum sativum HOM05D000073 ORTHO05D000033 9.2e-07 55.8 36 63.9
Psat5g288960 Pisum sativum HOM05D000073 ORTHO05D000033 9.2e-07 55.8 38 63.2
Prupe.6G018900 Prunus persica HOM05D000073 ORTHO05D000033 9.2e-07 55.8 36 63.9
Dinv43916 Davidia involucrata HOM05D000073 ORTHO05D000033 1.2e-06 55.5 35 71.4
Medtr4g066280 Medicago truncatula HOM05D000073 ORTHO05D000033 1.2e-06 55.5 35 65.7
Dinv43480 Davidia involucrata HOM05D000073 ORTHO05D000033 1.6e-06 55.1 35 71.4
Lj3g0021503 Lotus japonicus HOM05D000073 ORTHO05D000033 1.6e-06 55.1 38 60.5
Lj3g0022150 Lotus japonicus HOM05D000073 ORTHO05D000033 1.6e-06 55.1 38 57.9
Lj3g0022458 Lotus japonicus HOM05D000073 ORTHO05D000033 1.6e-06 55.1 38 60.5
Lj4g0011867 Lotus japonicus HOM05D000073 ORTHO05D000033 1.6e-06 55.1 38 57.9
Lj5g0013105 Lotus japonicus HOM05D000073 ORTHO05D000033 1.6e-06 55.1 36 61.1
MBI04_g27125_MAGBIO Magnolia biondii HOM05D000073 ORTHO05D000033 1.6e-06 55.1 41 58.5
Phvul.005G150600 Phaseolus vulgaris HOM05D000073 ORTHO05D000033 1.6e-06 55.1 38 60.5
RcHm_v2.0_Chr5g0071491 Rosa chinensis HOM05D000073 ORTHO05D000033 1.6e-06 55.1 38 57.9
TPR.G28087 Trifolium pratense HOM05D000073 ORTHO05D000033 1.6e-06 55.1 38 57.9
Actinidia08396 Actinidia chinensis HOM05D000073 ORTHO05D000033 2.1e-06 54.7 35 65.7
CSS0017631 Camellia sinensis var. sinensis HOM05D000073 ORTHO05D000033 2.1e-06 54.7 35 62.9
Manes.07G009960 Manihot esculenta HOM05D000073 ORTHO05D000033 2.1e-06 54.7 38 57.9
Manes.07G009968 Manihot esculenta HOM05D000073 ORTHO05D000033 2.1e-06 54.7 38 60.5
Phvul.011G200700 Phaseolus vulgaris HOM05D000073 ORTHO05D000033 2.1e-06 54.7 40 62.5
RcHm_v2.0_Chr5g0077961 Rosa chinensis HOM05D000073 ORTHO05D000033 2.1e-06 54.7 38 55.3
arahy.Tifrunner.gnm1.ann1.271GPI Arachis hypogaea HOM05D000073 ORTHO05D000033 2.7e-06 54.3 38 57.9
AUR62033980 Chenopodium quinoa HOM05D000073 ORTHO05D000033 2.7e-06 54.3 38 55.3
MBI04_g12746_MAGBIO Magnolia biondii HOM05D000073 ORTHO05D000033 2.7e-06 54.3 38 60.5
MD11G1023900 Malus domestica HOM05D000073 ORTHO05D000033 2.7e-06 54.3 35 65.7
Manes.07G009948 Manihot esculenta HOM05D000073 ORTHO05D000033 2.7e-06 54.3 38 57.9
Manes.07G009952 Manihot esculenta HOM05D000073 ORTHO05D000033 2.7e-06 54.3 38 57.9
Manes.07G009964 Manihot esculenta HOM05D000073 ORTHO05D000033 2.7e-06 54.3 38 57.9
Manes.07G009976 Manihot esculenta HOM05D000073 ORTHO05D000033 2.7e-06 54.3 38 57.9
Medtr2g098790 Medicago truncatula HOM05D000073 ORTHO05D000033 2.7e-06 54.3 38 60.5
Os09g0490400 Oryza sativa ssp. japonica HOM05D000073 ORTHO05D000033 2.7e-06 54.3 36 66.7
Prupe.6G134900 Prunus persica HOM05D000073 ORTHO05D000033 2.7e-06 54.3 38 60.5
Thecc.09G222100 Theobroma cacao HOM05D000073 ORTHO05D000033 2.7e-06 54.3 37 64.9
Cc02_g27260 Coffea canephora HOM05D000073 ORTHO05D000033 3.5e-06 53.9 35 68.6
Cc09_g06240 Coffea canephora HOM05D000073 ORTHO05D000033 3.5e-06 53.9 35 62.9
Glyma.11G130100 Glycine max HOM05D000073 ORTHO05D000033 3.5e-06 53.9 38 60.5
Glyma.15G031400 Glycine max HOM05D000073 ORTHO05D000033 3.5e-06 53.9 35 65.7
Lj3g0004905 Lotus japonicus HOM05D000073 ORTHO05D000033 3.5e-06 53.9 36 58.3
Lj3g0006832 Lotus japonicus HOM05D000073 ORTHO05D000033 3.5e-06 53.9 38 57.9
Lj4g0000106 Lotus japonicus HOM05D000073 ORTHO05D000033 3.5e-06 53.9 35 65.7
Lalb_Chr14g0372371 Lupinus albus HOM05D000073 ORTHO05D000033 3.5e-06 53.9 38 63.2
Manes.07G009956 Manihot esculenta HOM05D000073 ORTHO05D000033 3.5e-06 53.9 38 57.9
Manes.07G009980 Manihot esculenta HOM05D000073 ORTHO05D000033 3.5e-06 53.9 38 57.9
Os09g0491100 Oryza sativa ssp. japonica HOM05D000073 ORTHO05D000033 3.5e-06 53.9 38 63.2
Phvul.011G056400 Phaseolus vulgaris HOM05D000073 ORTHO05D000033 3.5e-06 53.9 38 60.5
QL04p004065 Quercus lobata HOM05D000073 ORTHO05D000033 3.5e-06 53.9 35 62.9
TPR.G28085 Trifolium pratense HOM05D000073 ORTHO05D000033 3.5e-06 53.9 39 59.0
TAR633G0088 Trochodendron aralioides HOM05D000073 ORTHO05D000033 3.5e-06 53.9 35 62.9
GSVIVG01032009001 Vitis vinifera HOM05D000073 ORTHO05D000033 3.5e-06 53.9 39 61.5
Actinidia16367 Actinidia chinensis HOM05D000073 ORTHO05D000033 4.6e-06 53.5 38 57.9
ATR0605G348 Amborella trichopoda HOM05D000073 ORTHO05D000033 4.6e-06 53.5 38 60.5
arahy.Tifrunner.gnm1.ann1.39HWVH Arachis hypogaea HOM05D000073 ORTHO05D000033 4.6e-06 53.5 38 55.3
arahy.Tifrunner.gnm1.ann1.IEIY3V Arachis hypogaea HOM05D000073 ORTHO05D000033 4.6e-06 53.5 38 55.3
CSS0014038 Camellia sinensis var. sinensis HOM05D000073 ORTHO05D000033 4.6e-06 53.5 36 63.9
Cc00_g32220 Coffea canephora HOM05D000073 ORTHO05D000033 4.6e-06 53.5 35 62.9
Lj3g0015190 Lotus japonicus HOM05D000073 ORTHO05D000033 4.6e-06 53.5 36 61.1
Lalb_Chr17g0337541 Lupinus albus HOM05D000073 ORTHO05D000033 4.6e-06 53.5 38 55.3
Manes.07G001500 Manihot esculenta HOM05D000073 ORTHO05D000033 4.6e-06 53.5 36 58.3
Manes.10G147200 Manihot esculenta HOM05D000073 ORTHO05D000033 4.6e-06 53.5 38 57.9
Medtr2g098520 Medicago truncatula HOM05D000073 ORTHO05D000033 4.6e-06 53.5 38 60.5
Os04g0474500 Oryza sativa ssp. japonica HOM05D000073 ORTHO05D000033 4.6e-06 53.5 38 60.5
PSO170G5570 Papaver somniferum HOM05D000073 ORTHO05D000033 4.6e-06 53.5 37 62.2
QL04p004005 Quercus lobata HOM05D000073 ORTHO05D000033 4.6e-06 53.5 37 62.2
QL04p004025 Quercus lobata HOM05D000073 ORTHO05D000033 4.6e-06 53.5 37 62.2
QL04p004115 Quercus lobata HOM05D000073 ORTHO05D000033 4.6e-06 53.5 39 59.0
Sabra03G0153900 Salix brachista HOM05D000073 ORTHO05D000033 4.6e-06 53.5 36 63.9
Sabra03G0156400 Salix brachista HOM05D000073 ORTHO05D000033 4.6e-06 53.5 36 63.9
ATR0049G046 Amborella trichopoda HOM05D000073 ORTHO05D000033 6.0e-06 53.1 38 60.5
ATR0605G022 Amborella trichopoda HOM05D000073 ORTHO05D000033 6.0e-06 53.1 38 55.3
Aqoxy7G02836 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 6.0e-06 53.1 38 57.9
CSS0025613 Camellia sinensis var. sinensis HOM05D000073 ORTHO05D000033 6.0e-06 53.1 38 57.9
Lj3g0016357 Lotus japonicus HOM05D000073 ORTHO05D000033 6.0e-06 53.1 37 56.8
PSO384G0804 Papaver somniferum HOM05D000073 ORTHO05D000033 6.0e-06 53.1 36 61.1
Peaxi162Scf01343g00012 Petunia axillaris HOM05D000073 ORTHO05D000033 6.0e-06 53.1 35 62.9
QL04p003936 Quercus lobata HOM05D000073 ORTHO05D000033 6.0e-06 53.1 35 62.9
QL04p004273 Quercus lobata HOM05D000073 ORTHO05D000033 6.0e-06 53.1 35 62.9
RcHm_v2.0_Chr5g0077951 Rosa chinensis HOM05D000073 ORTHO05D000033 6.0e-06 53.1 38 57.9
Sc07g0001270 Simmondsia chinensis HOM05D000073 ORTHO05D000033 6.0e-06 53.1 41 58.5
VMungo1127G0448 Vigna mungo HOM05D000073 ORTHO05D000033 6.0e-06 53.1 38 52.6
VMungo1127G1444 Vigna mungo HOM05D000073 ORTHO05D000033 6.0e-06 53.1 38 52.6
arahy.Tifrunner.gnm1.ann1.CC763J Arachis hypogaea HOM05D000073 ORTHO05D000033 7.8e-06 52.8 35 65.7
arahy.Tifrunner.gnm1.ann1.CF8GRF Arachis hypogaea HOM05D000073 ORTHO05D000033 7.8e-06 52.8 38 55.3
arahy.Tifrunner.gnm1.ann1.H3KMIQ Arachis hypogaea HOM05D000073 ORTHO05D000033 7.8e-06 52.8 38 55.3
arahy.Tifrunner.gnm1.ann1.T1SZCK Arachis hypogaea HOM05D000073 ORTHO05D000033 7.8e-06 52.8 35 65.7
Glyma.11G129200 Glycine max HOM05D000073 ORTHO05D000033 7.8e-06 52.8 40 57.5
Nn2g15603 Nelumbo nucifera HOM05D000073 ORTHO05D000033 7.8e-06 52.8 36 61.1
PSO170G1409 Papaver somniferum HOM05D000073 ORTHO05D000033 7.8e-06 52.8 37 59.5
Prupe.6G019000 Prunus persica HOM05D000073 ORTHO05D000033 7.8e-06 52.8 38 55.3
Thecc.09G221800 Theobroma cacao HOM05D000073 ORTHO05D000033 7.8e-06 52.8 36 61.1
TAR369G0243 Trochodendron aralioides HOM05D000073 ORTHO05D000033 7.8e-06 52.8 40 57.5
TAR369G0888 Trochodendron aralioides HOM05D000073 ORTHO05D000033 7.8e-06 52.8 38 57.9
vmacro13625 Vaccinium macrocarpon HOM05D000073 ORTHO05D000033 7.8e-06 52.8 35 57.1
VMungo1080G1514 Vigna mungo HOM05D000073 ORTHO05D000033 7.8e-06 52.8 37 56.8
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 7.8e-06 52.8 35 62.9
GSVIVG01032004001 Vitis vinifera HOM05D000073 ORTHO05D000033 7.8e-06 52.8 38 55.3


User provided reference genes

Program Settings