Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A276G88 Lonicera japonica HOM05D017178 ORTHO05D012096 6.0e-135 484.2 245 100.0
Lj3P1070T22 Lonicera japonica HOM05D017178 ORTHO05D012096 7.4e-85 317.8 193 85.5
Lj3P240T17 Lonicera japonica HOM05D017178 ORTHO05D012096 2.8e-55 219.5 146 78.8
Lj3P665T11 Lonicera japonica HOM05D017178 ORTHO05D012096 6.1e-55 218.4 141 80.1
Dinv29666 Davidia involucrata HOM05D000706 ORTHO05D001554 3.6e-31 139.4 318 37.1
Rhsim06G0200400 Rhododendron simsii HOM05D017178 ORTHO05D012096 8.4e-20 101.7 279 32.6
MSTRG.16476 Avicennia marina HOM05D000706 ORTHO05D001554 4.1e-19 99.4 258 31.8
TAR376G1119 Trochodendron aralioides HOM05D000706 ORTHO05D001554 5.4e-19 99.0 321 28.3
Manes.10G110800 Manihot esculenta HOM05D000706 ORTHO05D001554 7.1e-19 98.6 274 32.5
Dinv09371 Davidia involucrata HOM05D000706 ORTHO05D001554 4.6e-18 95.9 256 30.5
TAR628G1033 Trochodendron aralioides HOM05D000706 ORTHO05D012096 3.0e-17 93.2 224 35.3
FvH4_1g25810 Fragaria vesca HOM05D000706 ORTHO05D001554 3.9e-17 92.8 254 32.3
Gohir.D02G153300 Gossypium hirsutum HOM05D000706 ORTHO05D001554 2.5e-16 90.1 242 32.2
Gorai.005G172400 Gossypium raimondii HOM05D000706 ORTHO05D001554 3.3e-16 89.7 243 32.5
QL02p102391 Quercus lobata HOM05D043302 ORTHO05D012096 4.3e-16 89.4 287 32.4
Potri.004G133600 Populus trichocarpa HOM05D000706 ORTHO05D001554 7.3e-16 88.6 241 30.7
CiPaw.06G001000 Carya illinoinensis HOM05D000706 ORTHO05D001554 1.2e-15 87.8 236 33.9
Hma1.2p1_0157F.1_g069030 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 1.2e-15 87.8 86 51.2
Hma1.2p1_1368F.1_g278556 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 1.2e-15 87.8 86 51.2
TWI59G0710 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 1.2e-15 87.8 343 25.4
Migut.B00732 Erythranthe guttata HOM05D000706 ORTHO05D001554 2.8e-15 86.7 263 30.0
GSVIVG01023195001 Vitis vinifera HOM05D000706 ORTHO05D001554 3.6e-15 86.3 299 31.8
Lj6g0005324 Lotus japonicus HOM05D000706 ORTHO05D001554 8.1e-15 85.1 291 31.3
CSS0020817 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D001554 1.1e-14 84.7 238 30.3
Sabra04G0084500 Salix brachista HOM05D000706 ORTHO05D001554 1.1e-14 84.7 236 30.1
Duzib147G0053 Durio zibethinus HOM05D000706 ORTHO05D001554 1.8e-14 84.0 245 30.2
SGA_v2.0_scaffold167G38452 Striga asiatica HOM05D000706 ORTHO05D001554 1.8e-14 84.0 245 27.8
Thecc.01G144400 Theobroma cacao HOM05D000706 ORTHO05D001554 1.8e-14 84.0 316 27.2
Glyma.11G208500 Glycine max HOM05D000706 ORTHO05D001554 3.1e-14 83.2 90 47.8
Sp6g34490 Schrenkiella parvula HOM05D000706 ORTHO05D001554 3.1e-14 83.2 259 30.1
CARHR204580 Cardamine hirsuta HOM05D000706 ORTHO05D001554 4.0e-14 82.8 250 29.2
QL02p103028 Quercus lobata HOM05D043302 ORTHO05D012096 4.0e-14 82.8 282 31.9
Thhalv10013270m.g Eutrema salsugineum HOM05D000706 ORTHO05D001554 9.0e-14 81.6 247 31.6
Actinidia16541 Actinidia chinensis HOM05D000706 ORTHO05D001554 2.0e-13 80.5 244 31.1
Cfa019817 Carpinus fangiana HOM05D000706 ORTHO05D001554 2.0e-13 80.5 244 33.2
RcHm_v2.0_Chr6g0272281 Rosa chinensis HOM05D000706 ORTHO05D012096 2.6e-13 80.1 265 28.7
AT5G08430 Arabidopsis thaliana HOM05D000706 ORTHO05D001554 3.4e-13 79.7 255 29.4
Lalb_Chr18g0053861 Lupinus albus HOM05D000706 ORTHO05D012096 3.4e-13 79.7 188 33.5
FAN26G0079 Fragaria x ananassa HOM05D000706 ORTHO05D001554 5.8e-13 79.0 247 30.8
SalBow6G2696 Salvia bowleyana HOM05D000706 ORTHO05D001554 7.6e-13 78.6 100 44.0
TWI79G1627 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 7.6e-13 78.6 287 26.8
VMungo0540G0276 Vigna mungo HOM05D000706 ORTHO05D012096 7.6e-13 78.6 258 31.0
Atru.chr4.14_Atru.chr4.15 Acer truncatum HOM05D000706 ORTHO05D001554 9.9e-13 78.2 255 30.2
AL6G18900 Arabidopsis lyrata HOM05D000706 ORTHO05D001554 9.9e-13 78.2 257 29.6
MELO3C012577.2 Cucumis melo HOM05D000706 ORTHO05D001554 9.9e-13 78.2 244 28.7
FAN23G1421 Fragaria x ananassa HOM05D000706 ORTHO05D001554 1.7e-12 77.4 240 31.2
FAN19G2540 Fragaria x ananassa HOM05D000706 ORTHO05D001554 2.2e-12 77.0 242 31.0
Gohir.D04G177400 Gossypium hirsutum HOM05D000706 ORTHO05D001554 2.9e-12 76.6 248 28.6
Gorai.012G170300 Gossypium raimondii HOM05D000706 ORTHO05D001554 3.8e-12 76.3 248 28.2
EL10Ac4g09693 Beta vulgaris HOM05D000706 ORTHO05D001554 4.9e-12 75.9 274 27.7
Duzib132G0489 Durio zibethinus HOM05D000706 ORTHO05D001554 4.9e-12 75.9 275 28.0
MD15G1440800 Malus domestica HOM05D000706 ORTHO05D012096 6.4e-12 75.5 295 27.1
PSO447G0242 Papaver somniferum HOM05D000706 ORTHO05D001554 1.1e-11 74.7 293 29.7
FAN28G2355 Fragaria x ananassa HOM05D000706 ORTHO05D001554 1.4e-11 74.3 242 30.6
arahy.Tifrunner.gnm1.ann1.3KND2G Arachis hypogaea HOM05D000706 ORTHO05D001554 1.9e-11 73.9 90 50.0
Ca_25266_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 1.9e-11 73.9 92 39.1
ClCG09G022930 Citrullus lanatus HOM05D000706 ORTHO05D001554 2.4e-11 73.6 247 26.7
CsaV3_7G023180 Cucumis sativus L. HOM05D000706 ORTHO05D001554 2.4e-11 73.6 241 27.4
Phvul.006G085500 Phaseolus vulgaris HOM05D000706 ORTHO05D012096 2.4e-11 73.6 125 33.6
Carub.0006s0735 Capsella rubella HOM05D000706 ORTHO05D001554 3.2e-11 73.2 255 29.0
MELO3C016482.2 Cucumis melo HOM05D000706 ORTHO05D001554 3.2e-11 73.2 349 23.5
PSO210G5296 Papaver somniferum HOM05D000706 ORTHO05D001554 3.2e-11 73.2 291 29.2
Cc02_g27620 Coffea canephora HOM05D000706 ORTHO05D001554 5.4e-11 72.4 262 29.0
Prupe.4G286800 Prunus persica HOM05D000706 ORTHO05D001554 5.4e-11 72.4 238 28.6
ClCG10G007330 Citrullus lanatus HOM05D000706 ORTHO05D001554 9.3e-11 71.6 248 31.0
ECA246G4574 Erigeron canadensis HOM05D000706 ORTHO05D001554 9.3e-11 71.6 242 26.9
Thecc.02G012800 Theobroma cacao HOM05D000706 ORTHO05D001554 9.3e-11 71.6 267 28.8
Cpa.g.sc86.38 Carica papaya HOM05D000706 ORTHO05D001554 1.6e-10 70.9 231 28.1
COL.COLO4_12141 Corchorus olitorius HOM05D000706 ORTHO05D001554 2.7e-10 70.1 238 28.6
TAR636G1687 Trochodendron aralioides HOM05D000325 ORTHO05D012096 2.7e-10 70.1 88 43.2
Medtr3g064290 Medicago truncatula HOM05D000706 ORTHO05D001554 4.6e-10 69.3 269 29.7
Prupe.1G582800 Prunus persica HOM05D000706 ORTHO05D001554 4.6e-10 69.3 207 28.5
Sed0026982 Sechium edule HOM05D000706 ORTHO05D012096 4.6e-10 69.3 85 42.4
Ca_17061_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 6.0e-10 68.9 239 27.6
THA.LOC104818393 Tarenaya hassleriana HOM05D000706 ORTHO05D001554 6.0e-10 68.9 263 29.7
Lj2g0014541 Lotus japonicus HOM05D000706 ORTHO05D001554 1.3e-09 67.8 96 34.4
Sp2g23700 Schrenkiella parvula HOM05D000706 ORTHO05D001554 1.3e-09 67.8 242 31.0
A02p40950 Brassica napus HOM05D000706 ORTHO05D001554 1.7e-09 67.4 251 28.3
Ciclev10026382m.g Citrus clementina HOM05D000706 ORTHO05D001554 1.7e-09 67.4 244 27.0
Sc16g0009760 Simmondsia chinensis HOM05D000706 ORTHO05D001554 1.7e-09 67.4 259 26.6
EL10Ac6g14021 Beta vulgaris HOM05D000706 ORTHO05D001554 2.3e-09 67.0 246 27.2
Ca_09585_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 2.3e-09 67.0 244 29.5
Migut.B01326 Erythranthe guttata HOM05D000706 ORTHO05D001554 2.3e-09 67.0 285 24.9
arahy.Tifrunner.gnm1.ann1.2RX12T Arachis hypogaea HOM05D000706 ORTHO05D001554 3.0e-09 66.6 90 46.7
GSVIVG01023170001 Vitis vinifera HOM05D000706 ORTHO05D012096 3.9e-09 66.2 57 50.9
C02p60840 Brassica napus HOM05D000706 ORTHO05D001554 5.1e-09 65.9 232 31.0
BraA02t04959Z Brassica rapa HOM05D000706 ORTHO05D001554 5.1e-09 65.9 271 27.3
Cc02_g23440 Coffea canephora HOM05D017178 ORTHO05D012096 5.1e-09 65.9 174 35.1
Sed0004427 Sechium edule HOM05D000706 ORTHO05D001554 6.6e-09 65.5 265 24.9
SHI25322 Sapria himalayana HOM05D000706 ORTHO05D012096 1.1e-08 64.7 234 28.2
GSVIVG01000269001 Vitis vinifera HOM05D000706 ORTHO05D001554 1.5e-08 64.3 89 33.7
Eucgr.H05064 Eucalyptus grandis HOM05D000706 ORTHO05D001554 1.9e-08 63.9 262 27.1
BcaC03g13230 Brassica carinata HOM05D000706 ORTHO05D001554 2.5e-08 63.5 283 27.2
Medtr3g064280 Medicago truncatula HOM05D000706 ORTHO05D001554 2.5e-08 63.5 270 28.1
AL6G34760 Arabidopsis lyrata HOM05D000706 ORTHO05D001554 3.3e-08 63.2 240 32.1
CARHR190040 Cardamine hirsuta HOM05D000706 ORTHO05D001554 3.3e-08 63.2 251 29.5
C02p03620 Brassica napus HOM05D000706 ORTHO05D001554 4.3e-08 62.8 270 26.3
BraA02t09041Z Brassica rapa HOM05D000706 ORTHO05D001554 4.3e-08 62.8 250 27.6
TPR.G23221 Trifolium pratense HOM05D000706 ORTHO05D001554 5.6e-08 62.4 97 34.0
ECA238G3314 Erigeron canadensis HOM05D000706 ORTHO05D001554 7.3e-08 62.0 245 24.9
MD15G1140400 Malus domestica HOM05D000706 ORTHO05D001554 1.6e-07 60.8 247 25.9
RcHm_v2.0_Chr3g0484911 Rosa chinensis HOM05D000706 ORTHO05D001554 2.8e-07 60.1 132 30.3
Aqoxy5G01350_Aqoxy5G01351 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 3.6e-07 59.7 84 34.5
Medtr6g065790 Medicago truncatula HOM05D000706 ORTHO05D001554 3.6e-07 59.7 129 30.2
HanXRQChr10g0285891 Helianthus annuus HOM05D000706 ORTHO05D001554 4.8e-07 59.3 249 26.9
Nitab4.5_0003361g0020 Nicotiana tabacum HOM05D000706 ORTHO05D001554 4.8e-07 59.3 249 26.1
TAR633G2556 Trochodendron aralioides HOM05D000706 ORTHO05D012096 4.8e-07 59.3 86 38.4
Medtr3g064250 Medicago truncatula HOM05D000706 ORTHO05D001554 6.2e-07 58.9 272 25.0
Medtr3g064260 Medicago truncatula HOM05D000706 ORTHO05D001554 6.2e-07 58.9 281 27.0
PGR042G1088 Punica granatum HOM05D000706 ORTHO05D001633 8.1e-07 58.5 247 23.9
Oeu064260.1 Olea europaea HOM05D000706 ORTHO05D001554 1.1e-06 58.2 246 26.8
Nitab4.5_0000634g0010 Nicotiana tabacum HOM05D000706 ORTHO05D001554 1.4e-06 57.8 248 26.2
Aa31LG3G18110 Aethionema arabicum HOM05D000706 ORTHO05D001554 1.8e-06 57.4 252 27.8
Aqoxy7G00126_Aqoxy7G00127 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 1.8e-06 57.4 279 25.4
PSO541G1600 Papaver somniferum HOM05D000706 ORTHO05D001554 1.8e-06 57.4 293 24.6
Ah.03g136980 Amaranthus hybridus HOM05D000572 ORTHO05D000840 2.4e-06 57.0 82 39.0
PSO675G4911 Papaver somniferum HOM05D000706 ORTHO05D001554 2.4e-06 57.0 293 25.3
COL.COLO4_17687 Corchorus olitorius HOM05D000706 ORTHO05D001554 3.1e-06 56.6 320 24.1
DCAR_006657 Daucus carota HOM05D000706 ORTHO05D001554 3.1e-06 56.6 117 30.8
Rhsim09G0000400 Rhododendron simsii HOM05D000706 ORTHO05D001554 3.1e-06 56.6 91 34.1
Dinv29618 Davidia involucrata HOM05D000083 ORTHO05D001554 4.0e-06 56.2 57 54.4
Aa31LG11G2890 Aethionema arabicum HOM05D000706 ORTHO05D001554 5.3e-06 55.8 258 24.8
GSVIVG01023197001 Vitis vinifera HOM05D000706 ORTHO05D012096 5.3e-06 55.8 94 43.6
CARHR160720 Cardamine hirsuta HOM05D000706 ORTHO05D001633 9.0e-06 55.1 98 29.6
Hund07199 Selenicereus undatus HOM05D000706 ORTHO05D001554 9.0e-06 55.1 113 30.1
HPP92_000726 Vanilla planifolia HOM05D000706 ORTHO05D012096 9.0e-06 55.1 88 29.5


User provided reference genes

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