Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 6.0e-281 970.3 536 100.0
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 1.6e-188 663.3 507 78.5
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 4.4e-183 645.2 600 67.5
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 1.1e-136 491.1 597 53.8
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 3.0e-123 446.4 546 51.3
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 2.2e-118 430.3 546 48.9
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 2.4e-112 410.2 536 48.9
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 5.9e-111 405.6 577 46.8
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.9e-110 403.3 546 49.5
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 1.0e-107 394.8 445 58.0
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 3.0e-107 393.3 577 45.2
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 1.3e-102 377.9 461 49.7
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 2.5e-101 373.6 461 49.9
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 5.6e-101 372.5 456 52.0
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 8.0e-100 368.6 463 48.8
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 6.8e-99 365.5 442 52.7
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 1.5e-98 364.4 473 48.8
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 2.0e-98 364.0 420 53.1
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 3.4e-98 363.2 546 45.4
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 2.9e-97 360.1 546 45.4
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 9.2e-96 355.1 521 44.9
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 1.5e-93 347.8 546 46.2
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 3.3e-93 346.7 445 49.7
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 6.8e-91 339.0 446 50.0
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 8.9e-91 338.6 464 50.0
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 1.7e-89 334.3 407 55.3
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 3.7e-89 333.2 452 49.6
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 3.7e-89 333.2 464 45.5
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 3.7e-89 333.2 546 40.8
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 8.3e-89 332.0 605 40.5
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 8.3e-89 332.0 605 40.7
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 5.4e-88 329.3 546 41.9
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 7.0e-88 328.9 448 47.8
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 2.0e-87 327.4 444 48.4
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 1.3e-86 324.7 546 40.3
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 2.3e-86 323.9 597 40.5
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 3.9e-86 323.2 456 45.6
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 8.6e-86 322.0 550 41.1
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 1.9e-85 320.9 546 42.1
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 1.9e-85 320.9 605 40.0
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 3.3e-85 320.1 546 41.2
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 5.6e-85 319.3 446 48.9
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 5.6e-85 319.3 446 48.9
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 5.6e-85 319.3 442 46.6
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 1.6e-84 317.8 448 49.1
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 1.2e-82 311.6 605 38.7
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 2.6e-82 310.5 550 40.2
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 7.5e-82 308.9 439 49.4
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 9.9e-82 308.5 454 44.7
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 3.7e-81 306.6 446 45.3
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 4.9e-81 306.2 536 40.7
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 4.1e-80 303.1 526 41.1
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.2e-79 301.6 548 39.4
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 2.1e-79 300.8 462 42.9
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 3.5e-79 300.1 396 47.5
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 1.0e-78 298.5 546 41.0
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 1.7e-78 297.7 546 38.3
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 6.6e-78 295.8 468 44.0
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 6.6e-78 295.8 531 39.7
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 1.1e-77 295.0 464 43.3
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.5e-77 293.9 464 42.5
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.3e-77 293.1 468 43.8
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 7.3e-77 292.4 463 41.9
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 7.3e-77 292.4 546 41.9
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.1e-76 290.8 464 41.8
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 6.8e-75 285.8 457 42.7
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 8.9e-75 285.4 471 42.0
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.2e-74 285.0 530 42.1
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 4.4e-74 283.1 459 42.7
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 4.4e-74 283.1 546 38.3
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 2.9e-73 280.4 444 47.3
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 1.9e-72 277.7 504 40.9
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 9.2e-72 275.4 437 42.8
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.6e-71 274.6 462 40.7
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 1.0e-70 271.9 369 45.8
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 1.3e-70 271.6 448 40.2
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 3.0e-70 270.4 448 41.5
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 3.9e-70 270.0 387 45.2
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 8.7e-70 268.9 454 41.4
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 1.5e-69 268.1 459 40.7
RcHm_v2.0_Chr0c28g0501041 Rosa chinensis HOM05D003496 ORTHO05D003909 1.9e-69 267.7 353 47.3
RcHm_v2.0_Chr7g0243601 Rosa chinensis HOM05D003496 ORTHO05D003909 1.9e-69 267.7 353 47.3
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 1.9e-69 267.7 546 38.5
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 3.3e-69 266.9 395 46.6
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 7.3e-69 265.8 433 43.4
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 3.6e-68 263.5 546 36.8
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 4.7e-68 263.1 448 40.0
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 6.2e-68 262.7 535 38.5
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 8.1e-68 262.3 426 42.0
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 1.1e-67 261.9 608 35.2
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 1.2e-66 258.5 475 39.2
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 7.6e-66 255.8 428 41.4
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 9.9e-66 255.4 544 38.6
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 6.4e-65 252.7 546 33.9
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 7.1e-64 249.2 425 39.8
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 7.1e-64 249.2 425 39.8
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 7.1e-64 249.2 439 40.8
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 6.0e-63 246.1 459 38.8
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 2.3e-62 244.2 444 38.3
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 3.0e-62 243.8 433 38.6
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 8.7e-62 242.3 459 38.1
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 1.6e-60 238.0 538 37.2
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 6.2e-60 236.1 515 37.5
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 8.1e-60 235.7 568 33.3
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 8.1e-60 235.7 436 37.6
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 9.0e-59 232.3 436 37.2
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.2e-57 227.6 464 35.8
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 6.4e-57 226.1 544 34.2
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 2.4e-56 224.2 294 46.6
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 5.1e-54 216.5 348 45.7
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 6.7e-54 216.1 580 33.1
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 5.6e-53 213.0 540 32.6
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 1.3e-52 211.8 342 42.1
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 1.8e-51 208.0 534 32.0
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 1.5e-50 204.9 534 32.0
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 2.6e-50 204.1 534 32.4
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 5.8e-50 203.0 534 32.4
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 5.8e-50 203.0 534 32.4
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 7.6e-50 202.6 532 32.3
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 1.7e-49 201.4 346 43.4
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 2.2e-49 201.1 540 31.7
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 2.2e-49 201.1 540 31.7
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 3.8e-49 200.3 534 31.5
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 3.8e-49 200.3 531 31.5
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 1.4e-48 198.4 545 31.4
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 6.0e-47 193.0 448 33.7
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 6.7e-46 189.5 506 32.2
Solyc04g074120.4 Solanum lycopersicum HOM05D003496 ORTHO05D003909 2.1e-44 184.5 231 49.8
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 1.8e-43 181.4 493 29.6
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 2.4e-43 181.0 535 30.7
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 4.5e-42 176.8 534 29.8
CARHR022630 Cardamine hirsuta HOM05D003496 ORTHO05D003909 2.7e-39 167.5 301 38.5
Glyma.14G121700 Glycine max HOM05D003496 ORTHO05D003909 2.5e-37 161.0 155 59.4
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 5.7e-37 159.8 546 27.8
RcHm_v2.0_Chr0c28g0500941 Rosa chinensis HOM05D003496 ORTHO05D003909 1.0e-33 149.1 247 44.5
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.7e-28 131.7 415 30.4
RcHm_v2.0_Chr0c28g0500951 Rosa chinensis HOM05D003496 ORTHO05D003909 5.3e-27 126.7 146 45.2
FAN08G1794 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.5e-26 125.2 246 38.6
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 7.9e-23 112.8 153 43.8
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 9.7e-21 105.9 129 51.9
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 8.2e-20 102.8 125 49.6
FvH4_5g39261 Fragaria vesca HOM05D003496 ORTHO05D003909 2.0e-18 98.2 90 56.7
SEGI_13289 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 1.3e-17 95.5 446 24.9
FvH4_5g32650 Fragaria vesca HOM05D003496 ORTHO05D003909 2.1e-15 88.2 105 53.3
MBI16_g15384_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D003909 2.7e-15 87.8 90 60.0
ECA233G3681 Erigeron canadensis HOM05D003496 ORTHO05D003909 2.3e-14 84.7 207 32.9
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 3.0e-14 84.3 66 66.7
VMungo0647G2290 Vigna mungo HOM05D003496 ORTHO05D003909 2.6e-13 81.3 64 62.5
Glyma.02G069400 Glycine max HOM05D000487 ORTHO05D000405 2.8e-12 77.8 62 59.7
Glyma.13G224300 Glycine max HOM05D000487 ORTHO05D000405 2.8e-12 77.8 62 59.7
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.3e-09 68.9 122 42.6
CARHR022600 Cardamine hirsuta HOM05D003496 ORTHO05D003909 2.9e-09 67.8 53 58.5
Mapoly0040s0123 Marchantia polymorpha HOM05D003496 ORTHO05D003909 3.8e-09 67.4 260 29.2
RcHm_v2.0_Chr0c28g0500891 Rosa chinensis HOM05D003496 ORTHO05D003909 6.5e-09 66.6 62 64.5
CARHR022640 Cardamine hirsuta HOM05D003496 ORTHO05D003909 5.5e-08 63.5 110 35.5
ECA236G3179 Erigeron canadensis HOM05D003496 ORTHO05D003909 5.5e-08 63.5 85 49.4
CDE10G0427 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 5.2e-06 57.0 210 27.1
Lsat_1_v5_gn_8_133541 Lactuca sativa HOM05D000087 ORTHO05D014732 5.2e-06 57.0 46 58.7


User provided reference genes

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