Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A263G0 Lonicera japonica HOM05D002922 ORTHO05D235101 1.3e-301 1038.9 496 100.0
MD07G1215000 Malus domestica HOM05D002922 ORTHO05D003799 5.3e-13 80.1 57 63.2
TWI74G1246 Tripterygium wilfordii HOM05D002922 ORTHO05D003799 5.3e-13 80.1 120 39.2
DCAR_015448 Daucus carota HOM05D002922 ORTHO05D003799 6.9e-13 79.7 65 55.4
DCAR_028822 Daucus carota HOM05D002922 ORTHO05D003799 6.9e-13 79.7 65 55.4
ECA246G4453 Erigeron canadensis HOM05D002922 ORTHO05D003799 9.0e-13 79.3 65 53.8
HanXRQChr17g0536491 Helianthus annuus HOM05D002922 ORTHO05D003799 9.0e-13 79.3 65 53.8
Atru.chr12.234 Acer truncatum HOM05D002922 ORTHO05D003799 1.2e-12 79.0 65 55.4
arahy.Tifrunner.gnm1.ann1.UE907C Arachis hypogaea HOM05D002922 ORTHO05D003799 1.2e-12 79.0 57 61.4
arahy.Tifrunner.gnm1.ann1.XVW4S2 Arachis hypogaea HOM05D002922 ORTHO05D003799 1.2e-12 79.0 57 61.4
Dinv14537 Davidia involucrata HOM05D002922 ORTHO05D003799 1.2e-12 79.0 65 53.8
Glyma.11G227700 Glycine max HOM05D002922 ORTHO05D003799 1.2e-12 79.0 57 61.4
Glyma.18G029800 Glycine max HOM05D002922 ORTHO05D003799 1.2e-12 79.0 57 61.4
HanXRQChr13g0411491 Helianthus annuus HOM05D002922 ORTHO05D003799 1.2e-12 79.0 65 53.8
Lsat_1_v5_gn_3_23141 Lactuca sativa HOM05D002922 ORTHO05D003799 1.2e-12 79.0 65 53.8
Lj2C82T4 Lonicera japonica HOM05D002922 ORTHO05D003799 1.2e-12 79.0 57 61.4
LjContig00357g0024318 Lotus japonicus HOM05D002922 ORTHO05D003799 1.2e-12 79.0 57 61.4
Potri.008G065300 Populus trichocarpa HOM05D002922 ORTHO05D003799 1.2e-12 79.0 57 61.4
Sabra08G0048000 Salix brachista HOM05D002922 ORTHO05D003799 1.2e-12 79.0 57 61.4
VMungo1383G1855 Vigna mungo HOM05D002922 ORTHO05D003799 1.2e-12 79.0 57 61.4
MELO3C009183.2 Cucumis melo HOM05D002922 ORTHO05D003799 1.5e-12 78.6 57 61.4
Medtr5g081980 Medicago truncatula HOM05D002922 ORTHO05D003799 1.5e-12 78.6 57 59.6
PGR142G1198 Punica granatum HOM05D002922 ORTHO05D003799 1.5e-12 78.6 65 55.4
Sed0027622 Sechium edule HOM05D002922 ORTHO05D003799 1.5e-12 78.6 57 61.4
TPR.G19844 Trifolium pratense HOM05D002922 ORTHO05D003799 1.5e-12 78.6 57 59.6
GSVIVG01033994001 Vitis vinifera HOM05D002922 ORTHO05D003799 1.5e-12 78.6 57 59.6
CANSAT56G3354 Cannabis sativa HOM05D002922 ORTHO05D003799 2.0e-12 78.2 65 52.3
Ca_17149_v3 Cicer arietinum L. HOM05D002922 ORTHO05D003799 2.0e-12 78.2 65 53.8
CsaV3_3G034050 Cucumis sativus L. HOM05D002922 ORTHO05D003799 2.0e-12 78.2 57 61.4
Hma1.2p1_0763F.1_g214820 Hydrangea macrophylla HOM05D002922 ORTHO05D003799 2.0e-12 78.2 57 59.6
Medtr3g070180 Medicago truncatula HOM05D002922 ORTHO05D003799 2.0e-12 78.2 65 53.8
Psat5g127040 Pisum sativum HOM05D002922 ORTHO05D003799 2.0e-12 78.2 65 53.8
TPR.G16299 Trifolium pratense HOM05D002922 ORTHO05D003799 2.0e-12 78.2 65 53.8
CANSAT35G1821 Cannabis sativa HOM05D002922 ORTHO05D003799 2.6e-12 77.8 57 59.6
Cfa017244 Carpinus fangiana HOM05D002922 ORTHO05D003799 2.6e-12 77.8 57 59.6
Haze_20963 Corylus avellana HOM05D002922 ORTHO05D003799 2.6e-12 77.8 57 59.6
Lalb_Chr20g0116581 Lupinus albus HOM05D002922 ORTHO05D003799 2.6e-12 77.8 57 59.6
MD01G1147900 Malus domestica HOM05D002922 ORTHO05D003799 2.6e-12 77.8 57 59.6
Manes.10G016800 Manihot esculenta HOM05D002922 ORTHO05D003799 2.6e-12 77.8 57 59.6
PSO170G6395 Papaver somniferum HOM05D002922 ORTHO05D003799 2.6e-12 77.8 57 59.6
Phvul.001G240900 Phaseolus vulgaris HOM05D002922 ORTHO05D003799 2.6e-12 77.8 57 59.6
Prupe.2G247000 Prunus persica HOM05D002922 ORTHO05D003799 2.6e-12 77.8 57 59.6
Sabra10G0147800 Salix brachista HOM05D002922 ORTHO05D003799 2.6e-12 77.8 57 59.6
Cpa.g.sc163.7 Carica papaya HOM05D002922 ORTHO05D003799 3.4e-12 77.4 57 59.6
COL.COLO4_14569 Corchorus olitorius HOM05D002922 ORTHO05D003799 3.4e-12 77.4 57 59.6
Dinv37072 Davidia involucrata HOM05D002922 ORTHO05D003799 3.4e-12 77.4 57 57.9
Duzib128G1308 Durio zibethinus HOM05D002922 ORTHO05D003799 3.4e-12 77.4 57 59.6
Lj6g0025315 Lotus japonicus HOM05D002922 ORTHO05D003799 3.4e-12 77.4 57 59.6
MBI05_g30572_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D003799 3.4e-12 77.4 57 57.9
MBI06_g39481_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D003799 3.4e-12 77.4 57 57.9
MBI06_g42852_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D003799 3.4e-12 77.4 57 57.9
Potri.010G192200 Populus trichocarpa HOM05D002922 ORTHO05D003799 3.4e-12 77.4 57 59.6
QL07p036003 Quercus lobata HOM05D002922 ORTHO05D003799 3.4e-12 77.4 65 52.3
THA.LOC104826857 Tarenaya hassleriana HOM05D002922 ORTHO05D003799 3.4e-12 77.4 56 62.5
TAR633G2631 Trochodendron aralioides HOM05D002922 ORTHO05D003799 3.4e-12 77.4 57 57.9
TAR636G0575 Trochodendron aralioides HOM05D002922 ORTHO05D003799 3.4e-12 77.4 57 57.9
Gohir.A01G226100 Gossypium hirsutum HOM05D002922 ORTHO05D003799 4.5e-12 77.0 57 59.6
Gohir.A04G088900 Gossypium hirsutum HOM05D002922 ORTHO05D017209 4.5e-12 77.0 57 57.9
Gohir.D01G215800 Gossypium hirsutum HOM05D002922 ORTHO05D003799 4.5e-12 77.0 57 59.6
Gorai.002G262000 Gossypium raimondii HOM05D002922 ORTHO05D003799 4.5e-12 77.0 57 59.6
Gorai.012G112400 Gossypium raimondii HOM05D002922 ORTHO05D003799 4.5e-12 77.0 57 57.9
Hma1.2p1_0244F.1_g101290 Hydrangea macrophylla HOM05D002922 ORTHO05D003799 4.5e-12 77.0 57 57.9
Manes.07G126100 Manihot esculenta HOM05D002922 ORTHO05D003799 4.5e-12 77.0 57 59.6
Manes.07G126400 Manihot esculenta HOM05D002922 ORTHO05D003799 4.5e-12 77.0 57 59.6
Psat2g035480 Pisum sativum HOM05D002922 ORTHO05D003799 4.5e-12 77.0 57 57.9
PGR042G1257 Punica granatum HOM05D002922 ORTHO05D003799 4.5e-12 77.0 65 52.3
Manes.09G103300 Manihot esculenta HOM05D002922 ORTHO05D003799 5.8e-12 76.6 57 56.1
QL08p062680 Quercus lobata HOM05D002922 ORTHO05D003799 5.8e-12 76.6 57 57.9
TWI77G0782 Tripterygium wilfordii HOM05D002922 ORTHO05D003799 5.8e-12 76.6 120 37.5
Aa31LG10G8110 Aethionema arabicum HOM05D002922 ORTHO05D003799 7.6e-12 76.3 56 60.7
Ca_05937_v3 Cicer arietinum L. HOM05D002922 ORTHO05D003799 7.6e-12 76.3 57 57.9
Oeu023160.1 Olea europaea HOM05D002922 ORTHO05D003799 7.6e-12 76.3 48 68.8
RcHm_v2.0_Chr1g0369511 Rosa chinensis HOM05D002922 ORTHO05D003799 7.6e-12 76.3 57 57.9
THA.LOC104804885 Tarenaya hassleriana HOM05D002922 ORTHO05D003799 7.6e-12 76.3 56 60.7
THA.LOC104823142 Tarenaya hassleriana HOM05D002922 ORTHO05D003799 7.6e-12 76.3 56 60.7
Thecc.05G020200 Theobroma cacao HOM05D002922 ORTHO05D003799 7.6e-12 76.3 57 57.9
Atru.chr8.2212 Acer truncatum HOM05D002922 ORTHO05D003799 9.9e-12 75.9 57 57.9
CiPaw.01G296200 Carya illinoinensis HOM05D002922 ORTHO05D003799 9.9e-12 75.9 57 57.9
FvH4_7g24080 Fragaria vesca HOM05D002922 ORTHO05D003799 9.9e-12 75.9 56 58.9
FAN01G1210 Fragaria x ananassa HOM05D002922 ORTHO05D003799 9.9e-12 75.9 56 58.9
FAN03G1231 Fragaria x ananassa HOM05D002922 ORTHO05D003799 9.9e-12 75.9 56 58.9
FAN06G4031 Fragaria x ananassa HOM05D002922 ORTHO05D003799 9.9e-12 75.9 56 58.9
FAN10G2648 Fragaria x ananassa HOM05D002922 ORTHO05D003799 9.9e-12 75.9 56 58.9
MBI14_g04428_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D003799 9.9e-12 75.9 57 56.1
Thecc.10G025500 Theobroma cacao HOM05D002922 ORTHO05D003799 9.9e-12 75.9 57 57.9
arahy.Tifrunner.gnm1.ann1.G7GKNK Arachis hypogaea HOM05D002922 ORTHO05D003799 1.3e-11 75.5 57 57.9
arahy.Tifrunner.gnm1.ann1.QMPX2M Arachis hypogaea HOM05D002922 ORTHO05D003799 1.3e-11 75.5 57 57.9
MSTRG.224 Avicennia marina HOM05D002922 ORTHO05D003799 1.3e-11 75.5 48 68.8
Duzib093G0302 Durio zibethinus HOM05D002922 ORTHO05D003799 1.3e-11 75.5 57 57.9
Eucgr.J00239 Eucalyptus grandis HOM05D002922 ORTHO05D003799 1.3e-11 75.5 65 52.3
PSO782G2511 Papaver somniferum HOM05D002922 ORTHO05D003799 1.3e-11 75.5 57 57.9
Potri.008G065200 Populus trichocarpa HOM05D002922 ORTHO05D003799 1.3e-11 75.5 57 57.9
SEGI_36301 Sequoiadendron giganteum HOM05D002922 ORTHO05D003799 1.3e-11 75.5 65 49.2
ATR0618G324 Amborella trichopoda HOM05D002922 ORTHO05D003799 1.7e-11 75.1 65 49.2
MSTRG.27346 Avicennia marina HOM05D002922 ORTHO05D003799 1.7e-11 75.1 48 66.7
CAN.G282.39 Capsicum annuum HOM05D002922 ORTHO05D003799 1.7e-11 75.1 48 66.7
AUR62022845 Chenopodium quinoa HOM05D002922 ORTHO05D003799 1.7e-11 75.1 48 66.7
Eucgr.G03035 Eucalyptus grandis HOM05D002922 ORTHO05D003799 1.7e-11 75.1 57 56.1
Lalb_Chr15g0084251 Lupinus albus HOM05D002922 ORTHO05D003799 1.7e-11 75.1 57 57.9
MD12G1161700 Malus domestica HOM05D002922 ORTHO05D003799 1.7e-11 75.1 65 50.8
Nitab4.5_0000069g0020 Nicotiana tabacum HOM05D002922 ORTHO05D003799 1.7e-11 75.1 48 66.7
Nitab4.5_0011609g0010 Nicotiana tabacum HOM05D002922 ORTHO05D003799 1.7e-11 75.1 48 66.7
Peaxi162Scf00021g02523 Petunia axillaris HOM05D002922 ORTHO05D003799 1.7e-11 75.1 48 66.7
RcHm_v2.0_Chr3g0463641 Rosa chinensis HOM05D002922 ORTHO05D003799 1.7e-11 75.1 65 50.8
Sc11g0007240 Simmondsia chinensis HOM05D002922 ORTHO05D003799 1.7e-11 75.1 48 66.7
Duzib106G0456 Durio zibethinus HOM05D002922 ORTHO05D003799 2.9e-11 74.3 57 56.1
Thhalv10014182m.g Eutrema salsugineum HOM05D002922 ORTHO05D003799 2.9e-11 74.3 56 60.7
Actinidia33941 Actinidia chinensis HOM05D002922 ORTHO05D003799 3.8e-11 73.9 48 64.6
Aqoxy4G02648 Aquilegia oxysepala HOM05D002922 ORTHO05D003799 3.8e-11 73.9 65 50.8
CSS0033988 Camellia sinensis var. sinensis HOM05D002922 ORTHO05D003799 3.8e-11 73.9 48 64.6
AUR62012212 Chenopodium quinoa HOM05D002922 ORTHO05D003799 3.8e-11 73.9 48 64.6
Migut.F00703 Erythranthe guttata HOM05D002922 ORTHO05D003799 3.8e-11 73.9 48 64.6
Nn2g13639 Nelumbo nucifera HOM05D002922 ORTHO05D003799 3.8e-11 73.9 57 56.1
Prupe.6G272100 Prunus persica HOM05D002922 ORTHO05D003799 3.8e-11 73.9 65 49.2
SalBow6G1715 Salvia bowleyana HOM05D002922 ORTHO05D003799 3.8e-11 73.9 48 64.6
Hund15975 Selenicereus undatus HOM05D002922 ORTHO05D003799 3.8e-11 73.9 46 69.6
TWI73G0005 Tripterygium wilfordii HOM05D002922 ORTHO05D003799 3.8e-11 73.9 57 56.1
Aa31LG3G4710 Aethionema arabicum HOM05D002922 ORTHO05D003799 4.9e-11 73.6 56 58.9
MD04G1148200 Malus domestica HOM05D002922 ORTHO05D003799 4.9e-11 73.6 65 49.2
Rhsim09G0172400 Rhododendron simsii HOM05D002922 ORTHO05D003799 4.9e-11 73.6 48 64.6
SalBow6G5012 Salvia bowleyana HOM05D002922 ORTHO05D003799 4.9e-11 73.6 48 64.6
PGSC0003DMG400016358 Solanum tuberosum HOM05D002922 ORTHO05D003799 4.9e-11 73.6 48 64.6
THA.LOC104816559 Tarenaya hassleriana HOM05D002922 ORTHO05D003799 4.9e-11 73.6 56 58.9
vmacro10060 Vaccinium macrocarpon HOM05D002922 ORTHO05D003799 4.9e-11 73.6 48 64.6
FvH4_6g11900 Fragaria vesca HOM05D002922 ORTHO05D003799 8.4e-11 72.8 65 47.7
FAN09G1380 Fragaria x ananassa HOM05D002922 ORTHO05D003799 8.4e-11 72.8 65 47.7
Actinidia00936 Actinidia chinensis HOM05D002922 ORTHO05D003799 1.1e-10 72.4 48 64.6
BcaB01g05964 Brassica carinata HOM05D002922 ORTHO05D003799 1.1e-10 72.4 56 58.9
BcaB05g21690 Brassica carinata HOM05D002922 ORTHO05D003799 1.1e-10 72.4 56 58.9
A03p02450 Brassica napus HOM05D002922 ORTHO05D003799 1.1e-10 72.4 56 58.9
A10p30590 Brassica napus HOM05D002922 ORTHO05D003799 1.1e-10 72.4 56 58.9
C02p02510 Brassica napus HOM05D002922 ORTHO05D003799 1.1e-10 72.4 56 58.9
C03p02780 Brassica napus HOM05D002922 ORTHO05D003799 1.1e-10 72.4 56 58.9
BolC2t06215H Brassica oleracea HOM05D002922 ORTHO05D003799 1.1e-10 72.4 56 58.9
BolC3t12832H Brassica oleracea HOM05D002922 ORTHO05D003799 1.1e-10 72.4 56 58.9
BraA02t04862Z Brassica rapa HOM05D002922 ORTHO05D003799 1.1e-10 72.4 56 58.9
BraA03t09606Z Brassica rapa HOM05D002922 ORTHO05D003799 1.1e-10 72.4 56 58.9
Carub.0006s0468 Capsella rubella HOM05D002922 ORTHO05D003799 1.1e-10 72.4 56 58.9
AL6G15670 Arabidopsis lyrata HOM05D002922 ORTHO05D003799 1.4e-10 72.0 56 58.9
EL10Ac2g04793 Beta vulgaris HOM05D002922 ORTHO05D003799 1.4e-10 72.0 48 62.5
BcaB01g05750 Brassica carinata HOM05D002922 ORTHO05D003799 1.4e-10 72.0 56 58.9
BcaB05g21707 Brassica carinata HOM05D002922 ORTHO05D003799 1.4e-10 72.0 56 58.9
BcaC06g32286 Brassica carinata HOM05D002922 ORTHO05D003799 1.4e-10 72.0 56 58.9
BraA10t45100Z Brassica rapa HOM05D002922 ORTHO05D003799 1.4e-10 72.0 56 58.9
CARHR207480 Cardamine hirsuta HOM05D002922 ORTHO05D003799 1.4e-10 72.0 56 58.9
Migut.F01420 Erythranthe guttata HOM05D002922 ORTHO05D003799 1.4e-10 72.0 48 64.6
Sp6g37120 Schrenkiella parvula HOM05D002922 ORTHO05D003799 1.4e-10 72.0 56 58.9
SMO141G0297 Selaginella moellendorffii HOM05D002922 ORTHO05D003799 1.4e-10 72.0 65 46.2
Solyc01g008370.3 Solanum lycopersicum HOM05D002922 ORTHO05D003799 1.4e-10 72.0 48 62.5
Sopen01g003890 Solanum pennellii HOM05D002922 ORTHO05D003799 1.4e-10 72.0 48 62.5
CSS0049597 Camellia sinensis var. sinensis HOM05D002922 ORTHO05D003799 1.9e-10 71.6 42 69.0
CBR_g34730 Chara braunii HOM05D002922 ORTHO05D003799 1.9e-10 71.6 65 44.6
GSVIVG01019538001 Vitis vinifera HOM05D002922 ORTHO05D003799 1.9e-10 71.6 57 56.1
BcaC06g32353 Brassica carinata HOM05D002922 ORTHO05D003799 2.4e-10 71.2 56 57.1
C09p71050 Brassica napus HOM05D002922 ORTHO05D003799 2.4e-10 71.2 56 57.1
BolC9t59869H Brassica oleracea HOM05D002922 ORTHO05D003799 2.4e-10 71.2 56 57.1
Cfa001358 Carpinus fangiana HOM05D002922 ORTHO05D003799 2.4e-10 71.2 57 52.6
CiPaw.10G154900 Carya illinoinensis HOM05D002922 ORTHO05D003799 2.4e-10 71.2 57 54.4
SGA_v2.0_scaffold44G16707 Striga asiatica HOM05D002922 ORTHO05D003799 2.4e-10 71.2 48 62.5
HPP92_007512 Vanilla planifolia HOM05D002922 ORTHO05D003799 3.2e-10 70.9 57 52.6
Thhalv10021176m.g Eutrema salsugineum HOM05D002922 ORTHO05D003799 4.2e-10 70.5 56 57.1
Ah.16g103170 Amaranthus hybridus HOM05D002922 ORTHO05D003799 5.5e-10 70.1 48 60.4
AT5G05780 Arabidopsis thaliana HOM05D002922 ORTHO05D003799 5.5e-10 70.1 56 57.1
CARHR085830 Cardamine hirsuta HOM05D002922 ORTHO05D003799 5.5e-10 70.1 48 64.6
Pp3c16_16110 Physcomitrium patens HOM05D002922 ORTHO05D003799 5.5e-10 70.1 65 46.2
unitig_60.g25681 Utricularia gibba HOM05D002922 ORTHO05D003799 5.5e-10 70.1 48 62.5
Carub.0003s1058 Capsella rubella HOM05D002922 ORTHO05D003799 7.1e-10 69.7 56 55.4
AagrBONN_evm.TU.Sc2ySwM_228.1533 Anthoceros agrestis HOM05D002922 ORTHO05D003799 9.3e-10 69.3 57 50.9
Lj3C955T3 Lonicera japonica HOM05D002922 ORTHO05D003799 9.3e-10 69.3 68 50.0
Ah.10g036430 Amaranthus hybridus HOM05D002922 ORTHO05D003799 1.6e-09 68.6 48 58.3
CDE04G0121 Ceratophyllum demersum HOM05D002922 ORTHO05D003799 1.6e-09 68.6 57 49.1
Os04g0661900 Oryza sativa ssp. japonica HOM05D002922 ORTHO05D003799 1.6e-09 68.6 48 60.4
Sp3g09540 Schrenkiella parvula HOM05D002922 ORTHO05D003799 1.6e-09 68.6 56 55.4
Zm00001eb067440 Zea mays HOM05D002922 ORTHO05D003799 1.6e-09 68.6 48 60.4
Zm00001eb432790 Zea mays HOM05D002922 ORTHO05D003799 1.6e-09 68.6 48 60.4
AT3G11270 Arabidopsis thaliana HOM05D002922 ORTHO05D003799 2.7e-09 67.8 56 55.4
Sed0005665 Sechium edule HOM05D002922 ORTHO05D003799 2.7e-09 67.8 57 54.4
Cc02_g06850 Coffea canephora HOM05D002922 ORTHO05D003799 4.6e-09 67.0 48 60.4
AagrBONN_evm.TU.Sc2ySwM_368.1481 Anthoceros agrestis HOM05D002922 ORTHO05D003799 7.9e-09 66.2 57 49.1
Ciclev10012194m.g Citrus clementina HOM05D002922 ORTHO05D003799 7.9e-09 66.2 71 46.5
Mapoly0001s0009 Marchantia polymorpha HOM05D002922 ORTHO05D003799 1.0e-08 65.9 65 43.1
ClCG10G021940 Citrullus lanatus HOM05D002922 ORTHO05D003799 2.3e-08 64.7 82 42.7
Cre06.g278256 Chlamydomonas reinhardtii HOM05D002922 ORTHO05D003799 1.3e-06 58.9 56 48.2
A09p24010 Brassica napus HOM05D002922 ORTHO05D021868 2.1e-06 58.2 56 53.6
PRCOL_00001647 Prasinoderma coloniale HOM05D002922 ORTHO05D003799 6.2e-06 56.6 80 37.5


User provided reference genes

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