Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 6.8e-209 730.7 454 100.0
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 8.5e-135 484.6 446 60.8
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 2.3e-132 476.5 438 60.3
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 3.5e-128 462.6 417 59.7
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.0e-127 458.8 422 61.4
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 9.4e-126 454.5 443 56.7
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 8.0e-125 451.4 437 57.0
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.8e-124 450.3 435 59.8
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 2.0e-123 446.8 446 64.1
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.4e-121 439.9 446 54.5
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 5.7e-115 418.7 432 54.9
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 2.2e-114 416.8 437 53.8
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 1.4e-113 414.1 437 53.1
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 1.8e-113 413.7 438 53.7
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 9.1e-113 411.4 438 51.4
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.6e-112 410.6 437 53.1
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 2.0e-112 410.2 443 56.4
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 1.7e-111 407.1 445 53.0
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 2.9e-111 406.4 444 52.5
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 2.5e-110 403.3 446 51.6
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 2.5e-110 403.3 438 61.2
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 4.2e-110 402.5 445 60.7
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 4.2e-110 402.5 437 60.4
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 1.0e-108 397.9 447 49.2
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 1.0e-108 397.9 439 50.6
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 5.2e-108 395.6 439 50.3
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 8.9e-108 394.8 542 45.0
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.5e-107 394.0 438 51.6
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 2.0e-107 393.7 483 53.2
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 5.7e-107 392.1 376 58.0
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 7.5e-107 391.7 437 59.3
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 6.3e-106 388.7 443 54.2
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 1.2e-104 384.4 391 56.3
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 1.9e-102 377.1 435 50.6
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 4.3e-102 375.9 445 48.3
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 5.6e-102 375.6 428 50.5
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 7.3e-102 375.2 436 47.9
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 9.5e-102 374.8 436 48.2
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 1.6e-101 374.0 434 50.0
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 2.8e-101 373.2 445 52.4
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.8e-101 373.2 437 49.9
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 1.0e-100 371.3 369 62.1
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 9.8e-99 364.8 444 49.1
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 1.7e-98 364.0 439 47.4
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 1.7e-98 364.0 437 46.9
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 2.9e-98 363.2 373 54.7
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 4.9e-98 362.5 465 45.8
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 1.1e-97 361.3 439 47.2
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 4.1e-97 359.4 446 53.4
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 1.2e-96 357.8 439 47.8
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 1.2e-96 357.8 437 46.0
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 4.6e-96 355.9 443 43.1
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 7.8e-96 355.1 437 46.5
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.7e-95 354.0 442 45.9
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.0e-95 352.4 322 61.5
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 8.6e-95 351.7 437 50.1
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 1.2e-93 347.8 440 44.5
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 2.8e-93 346.7 438 46.1
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 1.8e-92 344.0 440 46.4
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 3.4e-91 339.7 439 45.3
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 3.4e-91 339.7 441 49.4
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.3e-90 337.8 437 44.2
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 6.4e-90 335.5 439 44.2
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 1.9e-89 334.0 441 43.5
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 5.4e-89 332.4 442 47.7
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 7.0e-89 332.0 437 44.4
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 7.0e-89 332.0 455 45.3
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 1.6e-88 330.9 440 43.9
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.0e-87 328.2 604 38.2
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 7.3e-86 322.0 439 42.8
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 9.5e-86 321.6 440 42.0
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 2.1e-85 320.5 449 42.3
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 4.0e-84 316.2 437 42.3
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 3.4e-83 313.2 437 46.0
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 5.8e-83 312.4 416 47.8
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 7.5e-83 312.0 447 42.5
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.7e-82 310.8 428 49.1
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 2.2e-82 310.5 435 46.4
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 3.7e-82 309.7 437 43.5
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.1e-81 308.1 439 41.9
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 4.1e-81 306.2 456 41.4
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 5.4e-81 305.8 456 41.2
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 5.4e-81 305.8 456 41.2
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 7.1e-81 305.4 441 44.2
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.6e-80 304.3 437 43.2
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 1.6e-80 304.3 247 62.8
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 7.8e-80 302.0 435 41.4
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.3e-79 300.4 464 40.3
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 2.3e-79 300.4 443 44.7
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 3.0e-79 300.1 441 44.2
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 5.1e-79 299.3 465 40.0
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 6.6e-79 298.9 498 38.4
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.5e-78 297.7 459 39.9
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 2.5e-78 297.0 423 48.0
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 4.3e-78 296.2 258 59.7
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 3.6e-77 293.1 437 41.0
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 8.1e-77 292.0 441 43.5
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 6.8e-76 288.9 437 43.9
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 2.6e-75 287.0 437 39.4
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 2.6e-75 287.0 451 41.5
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.5e-70 271.2 416 43.8
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 4.3e-70 269.6 348 47.7
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 1.4e-68 264.6 351 54.7
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 1.8e-68 264.2 352 43.8
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 5.8e-67 259.2 454 37.9
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 6.4e-66 255.8 382 42.4
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 2.1e-64 250.8 448 38.8
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.5e-62 244.6 445 40.0
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 1.3e-61 241.5 376 42.0
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 3.6e-61 240.0 434 39.2
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 1.5e-59 234.6 261 48.3
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 3.4e-59 233.4 279 44.8
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 5.4e-57 226.1 442 33.7
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.1e-56 224.2 610 32.0
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.5e-54 218.0 220 52.3
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.3e-53 214.9 206 53.9
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 1.4e-52 211.5 468 36.1
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 9.0e-52 208.8 203 54.7
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 9.9e-51 205.3 254 44.9
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.9e-49 201.1 413 36.8
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 6.2e-45 186.0 309 39.2
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 7.6e-43 179.1 221 48.9
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 2.1e-40 171.0 450 28.2
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 4.3e-38 163.3 206 41.3
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 1.8e-36 157.9 340 35.0
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 4.1e-36 156.8 389 32.9
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 2.0e-35 154.5 450 26.7
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 7.2e-33 146.0 137 62.0
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.2e-32 145.2 424 30.0
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 4.1e-28 130.2 153 43.1
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 5.3e-28 129.8 451 25.3
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 2.0e-27 127.9 204 37.7
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 1.7e-26 124.8 215 41.4
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 4.2e-25 120.2 142 47.2
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 2.3e-23 114.4 142 50.7
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 5.1e-23 113.2 254 31.1
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 8.8e-23 112.5 99 58.6
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.6e-22 110.9 98 58.2
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 2.2e-21 107.8 104 60.6
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 1.1e-20 105.5 82 68.3
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.4e-20 105.1 416 27.9
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 3.5e-19 100.5 99 49.5
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 4.2e-17 93.6 140 42.9
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 2.3e-15 87.8 409 25.2
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 3.9e-15 87.0 74 62.2
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 5.2e-15 86.7 151 37.7
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 1.1e-14 85.5 106 47.2
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 2.0e-11 74.7 207 28.5
arahy.Tifrunner.gnm1.ann1.MTQ0B2 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.3e-10 72.0 96 44.8
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 5.5e-09 66.6 44 75.0
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 4.7e-08 63.5 175 25.1
MBI08_g15045_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D010248 1.8e-07 61.6 81 50.6
Actinidia39035 Actinidia chinensis HOM05D004546 ORTHO05D005419 5.2e-07 60.1 54 57.4
MCO07G624 Micromonas commoda HOM05D004546 ORTHO05D005419 2.0e-06 58.2 141 25.5
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 4.4e-06 57.0 78 34.6
Actinidia39037 Actinidia chinensis HOM05D004546 ORTHO05D005419 5.7e-06 56.6 84 38.1
COL.COLO4_15711 Corchorus olitorius HOM05D004546 ORTHO05D005419 5.7e-06 56.6 68 45.6
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 5.7e-06 56.6 40 72.5


User provided reference genes

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