Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 6.0e-244 847.0 420 100.0
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 8.2e-209 730.3 420 85.2
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 1.4e-208 729.6 420 84.8
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 4.7e-204 714.5 420 81.7
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.0e-203 713.4 420 81.7
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 1.1e-200 703.4 420 81.7
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 2.0e-199 699.1 420 80.2
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 5.9e-199 697.6 420 80.0
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 4.0e-195 684.9 420 78.3
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.6e-194 682.2 420 78.1
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 2.4e-192 675.6 420 77.6
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 9.1e-192 673.7 420 77.9
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 1.2e-191 673.3 420 77.6
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 1.2e-191 673.3 420 77.6
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 5.9e-191 671.0 420 75.2
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 7.7e-191 670.6 420 77.1
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 1.0e-190 670.2 420 76.9
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 1.0e-190 670.2 420 76.4
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 1.3e-190 669.8 421 75.8
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 1.7e-190 669.5 420 77.6
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 3.2e-189 665.2 420 76.0
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 3.2e-189 665.2 420 76.7
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.8e-188 662.1 420 75.5
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 8.0e-188 660.6 420 75.5
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.0e-187 660.2 420 75.5
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.0e-187 660.2 420 75.5
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.0e-187 660.2 420 76.4
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 2.3e-187 659.1 419 77.1
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 4.0e-187 658.3 420 76.2
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 2.6e-186 655.6 420 75.2
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 4.4e-186 654.8 420 76.4
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 9.8e-186 653.7 420 76.4
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 9.8e-186 653.7 420 74.0
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.7e-185 652.9 420 76.2
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.7e-185 652.9 420 74.3
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 6.3e-185 651.0 420 75.2
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 8.3e-185 650.6 420 74.3
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 2.4e-184 649.0 420 75.0
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 4.1e-184 648.3 420 74.0
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 5.4e-184 647.9 420 74.5
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 5.4e-184 647.9 420 73.6
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 9.2e-184 647.1 420 74.3
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.6e-183 646.4 420 74.3
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 2.7e-183 645.6 417 74.6
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 4.5e-183 644.8 420 74.0
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 5.9e-183 644.4 420 74.5
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 7.8e-183 644.0 420 74.5
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 7.8e-183 644.0 420 72.6
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 2.3e-182 642.5 420 74.5
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 6.6e-182 641.0 425 73.2
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 6.6e-182 641.0 420 74.5
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 6.6e-182 641.0 420 74.3
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 1.5e-181 639.8 423 74.5
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.5e-181 639.0 420 74.0
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 3.3e-181 638.6 425 72.7
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 3.3e-181 638.6 420 73.6
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 2.1e-180 636.0 421 74.1
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 4.7e-180 634.8 405 76.0
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 4.7e-180 634.8 420 72.6
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 8.0e-180 634.0 425 73.9
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 8.0e-180 634.0 421 74.3
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 1.0e-179 633.6 420 72.1
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 4.0e-179 631.7 417 72.9
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 1.2e-178 630.2 420 72.4
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.5e-178 629.8 408 75.2
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 9.8e-178 627.1 420 71.9
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 1.3e-177 626.7 420 72.1
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 4.9e-177 624.8 420 73.1
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 6.4e-177 624.4 420 71.7
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 4.1e-176 621.7 420 71.9
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 4.1e-176 621.7 420 71.0
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 1.2e-175 620.2 423 73.3
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 1.0e-174 617.1 420 71.0
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 2.3e-174 615.9 421 71.5
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 1.5e-173 613.2 419 70.2
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 1.5e-173 613.2 421 70.5
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.5e-173 612.5 421 71.7
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 4.3e-173 611.7 420 69.5
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 4.3e-173 611.7 420 69.0
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 4.7e-172 608.2 420 68.8
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.8e-171 606.3 425 69.2
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 1.8e-171 606.3 424 72.4
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.2e-170 603.6 420 68.6
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 1.5e-170 603.2 420 68.3
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 6.4e-169 597.8 422 68.2
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.4e-168 595.9 420 70.5
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.6e-167 593.2 421 67.7
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 4.3e-165 585.1 420 67.9
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 2.3e-163 579.3 422 69.4
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.1e-163 578.9 377 72.4
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.5e-162 576.6 421 67.9
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 3.4e-162 575.5 420 65.7
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 1.3e-161 573.5 421 69.1
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 3.7e-161 572.0 421 68.2
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 6.4e-161 571.2 421 68.6
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 3.5e-159 565.5 420 66.4
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 3.9e-158 562.0 420 65.5
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 4.3e-157 558.5 420 65.5
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 5.6e-157 558.1 420 64.8
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 9.5e-157 557.4 420 64.5
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 6.2e-156 554.7 420 64.8
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 5.2e-155 551.6 420 64.5
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 8.9e-155 550.8 420 64.5
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 2.0e-154 549.7 420 64.3
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 2.0e-154 549.7 420 64.3
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 5.8e-154 548.1 420 63.3
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 3.8e-153 545.4 420 63.1
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 8.4e-153 544.3 420 62.1
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 1.6e-151 540.0 420 62.1
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.9e-149 533.1 420 60.7
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 3.1e-147 525.8 426 60.8
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 2.0e-146 523.1 421 60.1
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 6.2e-140 501.5 357 70.6
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 7.6e-138 494.6 421 57.7
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 6.9e-131 471.5 251 90.4
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 2.1e-127 459.9 405 56.0
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 2.1e-127 459.9 425 53.9
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.3e-124 450.7 397 57.4
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 4.8e-124 448.7 425 53.2
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 2.2e-113 413.3 282 70.6
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.2e-112 409.5 422 50.5
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 9.3e-112 407.9 411 48.7
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 8.2e-100 368.2 302 63.6
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 2.1e-95 353.6 412 47.3
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 3.0e-94 349.7 374 47.1
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 4.8e-92 342.4 248 65.7
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 9.4e-88 328.2 300 53.7
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 8.6e-73 278.5 317 45.1
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.8e-62 244.2 266 51.5
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 3.7e-60 236.5 134 81.3
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 1.7e-52 211.1 128 82.0
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 2.4e-43 180.6 161 57.1
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.4e-37 159.8 100 75.0
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 1.5e-32 144.8 92 73.9
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.2e-27 126.7 75 76.0
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 9.3e-27 125.6 72 77.8
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 1.3e-25 121.7 104 60.6
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 3.0e-25 120.6 72 76.4
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 1.1e-24 118.6 106 57.5
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 4.3e-24 116.7 72 75.0
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 4.3e-24 116.7 72 75.0
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 3.2e-11 73.9 191 31.9
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 2.5e-08 64.3 239 25.9
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 3.3e-08 63.9 239 25.9
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 3.3e-08 63.9 239 25.9
Ca_19405_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 5.6e-08 63.2 306 24.5
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 7.4e-08 62.8 244 25.8
HPP92_016716 Vanilla planifolia HOM05D005359 ORTHO05D006431 2.1e-07 61.2 85 41.2
Ca_08884_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 2.4e-06 57.8 248 25.8
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 3.1e-06 57.4 248 25.4
Haze_15913 Corylus avellana HOM05D001477 ORTHO05D001182 4.0e-06 57.0 226 24.3


User provided reference genes

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