Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 6.6e-185 650.6 333 100.0
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.7e-153 546.2 333 84.1
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 2.3e-153 545.8 333 84.1
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 5.1e-153 544.7 328 84.8
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 6.6e-153 544.3 328 84.5
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 8.7e-153 543.9 333 83.8
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 8.7e-153 543.9 333 83.2
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 1.1e-152 543.5 333 84.1
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.5e-152 542.3 333 83.8
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 4.3e-152 541.6 333 84.1
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 9.6e-152 540.4 333 82.6
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 1.2e-151 540.0 333 84.1
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.6e-151 539.7 333 83.2
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 1.6e-151 539.7 333 82.6
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 3.6e-151 538.5 330 83.3
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 6.2e-151 537.7 333 82.9
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 1.4e-150 536.6 331 83.1
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 1.4e-150 536.6 332 82.5
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 1.8e-150 536.2 333 81.1
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 1.8e-150 536.2 333 82.6
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 3.1e-150 535.4 332 81.9
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 3.1e-150 535.4 332 82.8
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 4.0e-150 535.0 334 82.3
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 5.3e-150 534.6 332 82.5
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 5.3e-150 534.6 333 82.9
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 5.3e-150 534.6 328 83.2
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 5.3e-150 534.6 333 82.3
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 5.3e-150 534.6 333 82.3
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 6.9e-150 534.3 332 82.5
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 1.2e-149 533.5 333 82.0
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 7.6e-149 530.8 333 82.0
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 9.9e-149 530.4 327 82.6
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 9.9e-149 530.4 333 82.6
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 9.9e-149 530.4 327 81.3
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 2.2e-148 529.3 327 83.5
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 3.8e-148 528.5 328 82.0
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.8e-148 528.5 328 82.0
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 3.8e-148 528.5 333 82.0
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 4.9e-148 528.1 328 82.0
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 1.4e-147 526.6 333 81.7
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 1.9e-147 526.2 331 80.7
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 2.4e-147 525.8 328 81.1
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.4e-147 525.8 328 81.4
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 3.2e-147 525.4 327 81.7
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 3.2e-147 525.4 333 81.4
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.2e-147 525.4 328 81.4
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.2e-147 525.4 328 81.4
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 9.3e-147 523.9 333 82.0
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 9.3e-147 523.9 327 80.7
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 1.2e-146 523.5 328 82.6
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 1.2e-146 523.5 327 80.4
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 6.0e-146 521.2 327 80.1
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 7.8e-146 520.8 333 80.2
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.0e-145 520.4 328 80.5
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.0e-145 520.4 330 80.0
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 1.3e-145 520.0 332 80.4
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 3.0e-145 518.8 330 79.7
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 3.9e-145 518.5 333 81.1
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 6.6e-145 517.7 328 80.2
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 6.6e-145 517.7 328 80.2
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 6.6e-145 517.7 328 80.2
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 6.6e-145 517.7 328 80.2
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 6.6e-145 517.7 333 81.4
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.9e-144 516.2 331 79.5
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 1.9e-144 516.2 317 83.0
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 3.3e-144 515.4 333 79.6
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 3.3e-144 515.4 327 78.9
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 4.3e-144 515.0 328 80.5
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 5.6e-144 514.6 328 79.9
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 7.3e-144 514.2 330 79.7
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 7.3e-144 514.2 327 79.2
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 9.6e-144 513.8 333 79.6
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 1.3e-143 513.5 327 80.1
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 1.3e-143 513.5 328 79.6
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 2.8e-143 512.3 327 78.6
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 2.8e-143 512.3 327 78.6
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 4.8e-143 511.5 327 79.2
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 8.1e-143 510.8 331 78.5
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 1.1e-142 510.4 331 78.5
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.8e-142 509.6 331 80.1
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 2.4e-142 509.2 333 76.9
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 2.4e-142 509.2 325 80.0
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 1.5e-141 506.5 333 77.8
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 5.8e-141 504.6 327 78.6
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 2.2e-140 502.7 332 77.1
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 6.4e-140 501.1 328 77.7
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 6.4e-140 501.1 327 77.7
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 1.1e-139 500.4 331 76.4
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.1e-139 500.4 328 77.7
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 1.4e-139 500.0 328 77.4
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 1.4e-139 500.0 328 77.4
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 1.4e-139 500.0 328 77.4
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 3.2e-139 498.8 323 79.9
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 2.7e-138 495.7 319 80.3
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.0e-137 493.8 332 76.8
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 8.1e-135 484.2 327 74.0
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 9.9e-133 477.2 316 75.9
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.1e-131 473.8 327 75.5
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 1.1e-131 473.8 404 65.6
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 9.3e-131 470.7 430 60.7
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 3.9e-129 465.3 296 80.1
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.1e-127 459.5 343 68.2
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 1.0e-124 450.7 333 72.4
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 3.8e-124 448.7 328 72.3
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 1.6e-122 443.4 333 68.8
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 2.5e-120 436.0 332 67.2
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 2.2e-119 433.0 332 66.6
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.1e-118 429.1 330 67.6
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 1.1e-115 420.6 271 78.2
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 1.9e-115 419.9 332 64.2
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.7e-111 406.8 229 89.1
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.2e-107 392.5 333 66.4
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 1.2e-106 390.6 221 87.3
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.3e-100 370.5 229 80.8
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 5.0e-100 368.6 215 87.4
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 4.4e-96 355.5 217 82.0
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 1.1e-94 350.9 222 80.6
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 4.1e-94 349.0 206 84.5
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 1.2e-80 304.3 176 88.1
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 1.8e-73 280.4 200 72.5
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 9.5e-67 258.1 323 44.9
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 9.5e-67 258.1 332 45.2
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 3.5e-61 239.6 131 91.6
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.3e-59 232.6 162 72.8
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.6e-59 232.3 132 86.4
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 3.6e-58 229.6 132 86.4
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 1.5e-51 207.6 140 74.3
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 7.6e-48 195.3 323 33.1
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 5.6e-43 179.1 128 73.4
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 9.6e-43 178.3 350 36.9
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.1e-41 174.9 328 40.2
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.7e-36 157.5 109 77.1
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 6.9e-33 145.6 83 85.5
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.6e-29 134.4 143 54.5
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.0e-28 131.7 84 77.4
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 1.3e-28 131.3 112 63.4
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 3.9e-28 129.8 79 81.0
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 2.5e-27 127.1 101 63.4
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 1.8e-25 120.9 76 77.6
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 1.8e-25 120.9 76 77.6
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 1.8e-25 120.9 76 77.6
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 7.6e-24 115.5 76 73.7
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 7.6e-24 115.5 76 73.7
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 7.6e-24 115.5 126 47.6
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 2.9e-23 113.6 76 72.4
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 1.3e-18 98.2 64 73.4
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 5.5e-14 82.8 54 77.8
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 1.6e-13 81.3 81 55.6
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 3.5e-13 80.1 44 88.6
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 8.2e-10 68.9 35 94.3
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.1e-09 68.6 35 91.4
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.4e-09 67.4 36 88.9
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.6e-08 63.9 34 88.2
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 3.4e-08 63.5 36 80.6
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 3.8e-07 60.1 86 41.9
arahy.Tifrunner.gnm1.ann1.SQ6FML Arachis hypogaea HOM05D000121 ORTHO05D031608 2.5e-06 57.4 40 80.0


User provided reference genes

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