Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 3.5e-71 271.6 141 100.0
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 8.1e-52 207.2 136 80.9
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 5.3e-51 204.5 138 79.0
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 5.3e-51 204.5 136 77.2
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 2.0e-50 202.6 136 76.5
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 4.5e-50 201.4 136 80.1
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 4.5e-50 201.4 136 80.1
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 1.3e-49 199.9 136 79.4
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 2.2e-49 199.1 136 80.9
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 2.2e-49 199.1 138 76.1
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 8.4e-49 197.2 138 76.8
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 8.4e-49 197.2 138 75.4
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 4.2e-48 194.9 138 73.9
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 5.5e-48 194.5 136 79.4
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 1.2e-47 193.4 136 79.4
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 1.6e-47 193.0 137 78.1
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 1.6e-47 193.0 136 77.2
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 6.0e-47 191.0 136 76.5
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 7.9e-47 190.7 136 77.2
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 7.9e-47 190.7 136 77.2
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 1.0e-46 190.3 136 75.7
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 1.3e-46 189.9 137 76.6
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 1.3e-46 189.9 136 75.7
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 1.8e-46 189.5 136 75.0
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 3.0e-46 188.7 136 75.7
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 3.0e-46 188.7 136 75.7
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 3.0e-46 188.7 136 72.1
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 3.9e-46 188.3 135 76.3
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 3.9e-46 188.3 136 75.0
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 5.1e-46 188.0 134 75.4
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 5.1e-46 188.0 136 74.3
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 1.1e-45 186.8 139 74.1
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 1.1e-45 186.8 136 75.0
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 1.9e-45 186.0 136 76.5
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 2.5e-45 185.7 136 76.5
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.5e-45 185.7 142 72.5
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 3.3e-45 185.3 135 76.3
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 4.3e-45 184.9 135 74.1
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 5.6e-45 184.5 136 73.5
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 5.6e-45 184.5 139 74.1
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 7.4e-45 184.1 139 71.2
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 9.6e-45 183.7 136 74.3
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 9.6e-45 183.7 136 75.0
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 1.3e-44 183.3 136 69.1
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 1.3e-44 183.3 136 75.0
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 1.6e-44 183.0 136 69.9
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 1.6e-44 183.0 136 72.8
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 2.1e-44 182.6 136 73.5
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.1e-44 182.6 142 71.1
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 2.8e-44 182.2 137 74.5
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.8e-43 179.5 141 71.6
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 2.4e-43 179.1 137 71.5
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 6.9e-43 177.6 136 70.6
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 6.9e-43 177.6 137 72.3
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 9.0e-43 177.2 136 71.3
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 9.0e-43 177.2 136 73.5
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 9.0e-43 177.2 136 72.8
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 9.0e-43 177.2 137 68.6
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 9.0e-43 177.2 137 69.3
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 1.2e-42 176.8 137 70.1
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.5e-42 176.4 138 66.7
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.5e-42 176.4 136 69.9
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 2.0e-42 176.0 139 66.9
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 2.6e-42 175.6 136 69.9
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 2.6e-42 175.6 136 71.3
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 3.4e-42 175.3 136 69.1
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 4.5e-42 174.9 136 70.6
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 4.5e-42 174.9 137 67.9
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 5.8e-42 174.5 137 70.1
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 1.3e-41 173.3 136 71.3
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 1.7e-41 172.9 136 70.6
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 1.7e-41 172.9 136 68.4
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 2.9e-41 172.2 137 68.6
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 3.8e-41 171.8 136 69.9
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 6.5e-41 171.0 136 69.1
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 8.4e-41 170.6 136 68.4
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 8.4e-41 170.6 136 70.6
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 8.4e-41 170.6 136 71.3
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 8.4e-41 170.6 136 67.6
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 1.1e-40 170.2 136 68.4
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 1.1e-40 170.2 137 67.9
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 1.1e-40 170.2 137 67.9
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 1.1e-40 170.2 137 67.9
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 1.4e-40 169.9 137 68.6
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 1.4e-40 169.9 136 69.1
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 1.4e-40 169.9 136 68.4
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 1.4e-40 169.9 136 67.6
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 1.9e-40 169.5 136 68.4
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 2.5e-40 169.1 136 68.4
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 1.6e-39 166.4 136 68.4
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 4.6e-39 164.9 159 64.2
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 7.9e-39 164.1 136 68.4
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 1.0e-38 163.7 136 67.6
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 3.9e-38 161.8 137 65.7
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 5.1e-38 161.4 137 65.7
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 1.1e-37 160.2 138 63.8
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 1.1e-37 160.2 155 63.2
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 1.9e-37 159.5 137 65.0
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 3.3e-37 158.7 139 65.5
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 4.3e-37 158.3 136 63.2
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 7.4e-37 157.5 137 63.5
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 7.4e-37 157.5 142 65.5
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.3e-36 156.8 122 72.1
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 4.5e-34 148.3 136 61.8
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 5.9e-34 147.9 133 60.2
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 4.2e-32 141.7 136 61.0
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 2.1e-31 139.4 136 60.3
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 1.0e-30 137.1 136 57.4
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 1.8e-30 136.3 91 73.6
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 3.9e-30 135.2 143 55.9
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 3.9e-30 135.2 136 58.8
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 4.3e-29 131.7 136 57.4
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 5.7e-29 131.3 136 58.8
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 1.6e-28 129.8 137 57.7
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 1.4e-27 126.7 102 66.7
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 2.9e-25 119.0 136 56.6
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 1.4e-24 116.7 139 51.1
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 1.0e-22 110.5 75 76.0
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 7.4e-21 104.4 76 71.1
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 2.4e-19 99.4 136 50.7
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 3.1e-11 72.4 64 64.1
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 5.3e-11 71.6 156 37.8
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 1.9e-08 63.2 65 58.5
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 9.4e-08 60.8 61 55.7
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 1.6e-07 60.1 68 58.8
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 8.0e-07 57.8 62 58.1
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 8.0e-07 57.8 64 50.0


User provided reference genes

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