Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A231T54 Lonicera japonica HOM05D045713 ORTHO05D000039 1.4e-127 459.5 224 100.0
Lj5C232T7 Lonicera japonica HOM05D045713 ORTHO05D000039 1.5e-84 316.6 180 86.7
Actinidia29354 Actinidia chinensis HOM05D000007 ORTHO05D000039 9.7e-15 84.7 249 27.7
Actinidia37850 Actinidia chinensis HOM05D000007 ORTHO05D000039 3.1e-13 79.7 150 36.0
Lj8P116T38 Lonicera japonica HOM05D000007 ORTHO05D000039 1.5e-12 77.4 151 36.4
Thecc.07G075200 Theobroma cacao HOM05D000007 ORTHO05D000039 4.5e-12 75.9 255 27.5
Dinv05355 Davidia involucrata HOM05D000007 ORTHO05D000039 1.7e-11 73.9 142 35.9
CSS0048184 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 2.9e-11 73.2 161 31.1
Manes.07G068800 Manihot esculenta HOM05D000007 ORTHO05D000039 2.9e-11 73.2 146 31.5
Dinv19778 Davidia involucrata HOM05D000007 ORTHO05D000039 3.8e-11 72.8 146 32.9
Dinv23704 Davidia involucrata HOM05D000007 ORTHO05D000039 3.8e-11 72.8 146 34.2
QL04p019545 Quercus lobata HOM05D000007 ORTHO05D000039 6.5e-11 72.0 248 27.0
Cc05_g08680 Coffea canephora HOM05D000007 ORTHO05D000039 1.4e-10 70.9 154 31.8
Lj1P655T32 Lonicera japonica HOM05D000007 ORTHO05D000039 2.5e-10 70.1 161 32.3
Dinv15480 Davidia involucrata HOM05D000007 ORTHO05D000039 4.2e-10 69.3 147 34.7
Nitab4.5_0018863g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 4.2e-10 69.3 137 33.6
Dinv21276 Davidia involucrata HOM05D000007 ORTHO05D000039 7.2e-10 68.6 143 34.3
vmacro06021 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 9.4e-10 68.2 151 33.1
DCAR_010588 Daucus carota HOM05D000007 ORTHO05D000039 1.2e-09 67.8 144 34.0
Cc05_g06410 Coffea canephora HOM05D000007 ORTHO05D000039 1.6e-09 67.4 162 31.5
DCAR_019197 Daucus carota HOM05D000007 ORTHO05D000039 4.6e-09 65.9 152 34.9
Hma1.2p1_1797F.1_g302840 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 4.6e-09 65.9 155 34.8
Nitab4.5_0000249g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000039 4.6e-09 65.9 137 31.4
Rhsim04G0064400 Rhododendron simsii HOM05D000007 ORTHO05D000039 6.1e-09 65.5 113 38.1
CSS0017530 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 1.0e-08 64.7 157 28.0
GSVIVG01013506001 Vitis vinifera HOM05D000007 ORTHO05D000039 1.0e-08 64.7 128 34.4
Lj1P665T33 Lonicera japonica HOM05D000007 ORTHO05D000039 1.4e-08 64.3 148 31.8
QL04p019437 Quercus lobata HOM05D000007 ORTHO05D000039 1.4e-08 64.3 156 31.4
Cc02_g08310 Coffea canephora HOM05D000007 ORTHO05D000039 1.8e-08 63.9 119 32.8
Lj1P670T24 Lonicera japonica HOM05D000007 ORTHO05D000039 1.8e-08 63.9 153 31.4
Peaxi162Scf00384g00125 Petunia axillaris HOM05D000007 ORTHO05D000039 1.8e-08 63.9 157 29.3
Lj1P673T22 Lonicera japonica HOM05D000007 ORTHO05D000039 2.3e-08 63.5 153 31.4
Actinidia11170 Actinidia chinensis HOM05D000007 ORTHO05D000039 3.0e-08 63.2 143 35.0
Dinv41267 Davidia involucrata HOM05D000007 ORTHO05D000039 3.0e-08 63.2 168 29.8
Rhsim04G0065500 Rhododendron simsii HOM05D000007 ORTHO05D000039 3.0e-08 63.2 145 31.0
TWI31G0102 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 3.0e-08 63.2 140 30.7
Ciclev10030186m.g Citrus clementina HOM05D000007 ORTHO05D000039 3.9e-08 62.8 174 29.3
Duzib147G0192 Durio zibethinus HOM05D000007 ORTHO05D000039 3.9e-08 62.8 200 29.0
Lj1C655T5 Lonicera japonica HOM05D000007 ORTHO05D000039 3.9e-08 62.8 157 31.2
QL01p000757 Quercus lobata HOM05D000007 ORTHO05D000039 3.9e-08 62.8 136 32.4
QL04p019188 Quercus lobata HOM05D000007 ORTHO05D000039 5.1e-08 62.4 163 30.7
Cfa004502 Carpinus fangiana HOM05D000007 ORTHO05D000039 6.7e-08 62.0 271 23.6
Lj1P652T23 Lonicera japonica HOM05D000007 ORTHO05D000039 6.7e-08 62.0 54 51.9
Hma1.2p1_0178F.1_g078390 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.1e-07 61.2 140 31.4
Lj8P354T16 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-07 61.2 131 32.1
Cfa004551 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.5e-07 60.8 148 29.1
ECA238G3453 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.5e-07 60.8 173 30.6
Lj1P674T76 Lonicera japonica HOM05D000007 ORTHO05D000039 1.5e-07 60.8 104 34.6
Psat6g108160 Pisum sativum HOM05D000007 ORTHO05D000017 1.5e-07 60.8 109 34.9
Potri.001G262900 Populus trichocarpa HOM05D000007 ORTHO05D000039 1.5e-07 60.8 138 29.7
Hund19583 Selenicereus undatus HOM05D000007 ORTHO05D000039 1.5e-07 60.8 43 62.8
TAR369G0887 Trochodendron aralioides HOM05D000007 ORTHO05D001644 1.5e-07 60.8 66 39.4
Haze_10070 Corylus avellana HOM05D000007 ORTHO05D000039 2.0e-07 60.5 141 31.2
Nitab4.5_0000990g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000039 2.0e-07 60.5 165 29.7
Cc05_g08700 Coffea canephora HOM05D000007 ORTHO05D000039 2.6e-07 60.1 158 27.8
DCAR_012847 Daucus carota HOM05D000007 ORTHO05D000039 2.6e-07 60.1 121 33.1
FAN03G2862 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.6e-07 60.1 109 32.1
FAN04G2450 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.6e-07 60.1 68 45.6
Peaxi162Scf00152g00825 Petunia axillaris HOM05D000007 ORTHO05D000039 2.6e-07 60.1 57 49.1
vmacro19864 Vaccinium macrocarpon HOM05D001759 ORTHO05D000039 2.6e-07 60.1 140 27.1
AUR62015025 Chenopodium quinoa HOM05D000007 ORTHO05D000039 3.3e-07 59.7 57 47.4
FvH4_5g33960 Fragaria vesca HOM05D000007 ORTHO05D000039 3.3e-07 59.7 68 45.6
FAN08G3168 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.3e-07 59.7 68 45.6
FAN09G0182 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.3e-07 59.7 142 30.3
FAN18G4160 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.3e-07 59.7 68 45.6
Lj8P355T18 Lonicera japonica HOM05D000007 ORTHO05D000039 3.3e-07 59.7 131 31.3
COL.COLO4_14844 Corchorus olitorius HOM05D000007 ORTHO05D000039 4.4e-07 59.3 230 26.5
Peaxi162Scf00469g00087 Petunia axillaris HOM05D000007 ORTHO05D000039 4.4e-07 59.3 49 55.1
vmacro12404 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 4.4e-07 59.3 154 28.6
DCAR_018718 Daucus carota HOM05D000007 ORTHO05D000039 5.7e-07 58.9 74 36.5
FvH4_6g33750 Fragaria vesca HOM05D000007 ORTHO05D000039 5.7e-07 58.9 56 50.0
Lj1P670T34 Lonicera japonica HOM05D000007 ORTHO05D000039 5.7e-07 58.9 153 30.1
Dinv07686 Davidia involucrata HOM05D000007 ORTHO05D000039 7.4e-07 58.5 142 26.1
Migut.M00317 Erythranthe guttata HOM05D000007 ORTHO05D000039 7.4e-07 58.5 131 28.2
Gohir.D13G149200 Gossypium hirsutum HOM05D000007 ORTHO05D000039 7.4e-07 58.5 163 30.7
Lj1P673T32 Lonicera japonica HOM05D000007 ORTHO05D000039 7.4e-07 58.5 153 30.1
Nitab4.5_0005902g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000039 7.4e-07 58.5 157 28.7
QL03p015085 Quercus lobata HOM05D000007 ORTHO05D000039 7.4e-07 58.5 138 29.0
QL07p003134 Quercus lobata HOM05D000007 ORTHO05D000039 7.4e-07 58.5 141 27.7
QL07p003180 Quercus lobata HOM05D000007 ORTHO05D000039 7.4e-07 58.5 147 29.9
RcHm_v2.0_Chr1g0344471 Rosa chinensis HOM05D000007 ORTHO05D000039 7.4e-07 58.5 121 31.4
RcHm_v2.0_Chr1g0344741 Rosa chinensis HOM05D000007 ORTHO05D000039 7.4e-07 58.5 60 50.0
RcHm_v2.0_Chr1g0350191 Rosa chinensis HOM05D000007 ORTHO05D000039 7.4e-07 58.5 153 28.1
vmacro13637 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 7.4e-07 58.5 46 58.7
Lj1C664T13 Lonicera japonica HOM05D000007 ORTHO05D000039 9.7e-07 58.2 150 31.3
Medtr2g078850 Medicago truncatula HOM05D000007 ORTHO05D000017 9.7e-07 58.2 109 28.4
Prupe.3G013300 Prunus persica HOM05D000007 ORTHO05D000039 9.7e-07 58.2 105 38.1
GSVIVG01013538001 Vitis vinifera HOM05D000007 ORTHO05D001738 9.7e-07 58.2 81 37.0
Actinidia07889 Actinidia chinensis HOM05D000007 ORTHO05D000039 1.3e-06 57.8 142 30.3
Duzib147G0399 Durio zibethinus HOM05D000007 ORTHO05D000039 1.3e-06 57.8 107 33.6
FAN05G3599 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-06 57.8 57 52.6
Gorai.013G166900 Gossypium raimondii HOM05D000007 ORTHO05D000039 1.3e-06 57.8 121 31.4
Manes.04G093500 Manihot esculenta HOM05D000007 ORTHO05D000039 1.3e-06 57.8 113 31.9
Nitab4.5_0002398g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.3e-06 57.8 128 28.1
QL07p003114 Quercus lobata HOM05D000007 ORTHO05D000039 1.3e-06 57.8 142 28.9
QL12p021856 Quercus lobata HOM05D000007 ORTHO05D000039 1.3e-06 57.8 46 52.2
SGA_v2.0_scaffold66G22326 Striga asiatica HOM05D000227 ORTHO05D000451 1.3e-06 57.8 75 41.3
Cc09_g00810 Coffea canephora HOM05D000007 ORTHO05D000017 1.7e-06 57.4 65 44.6
FAN09G3540 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.7e-06 57.4 56 48.2
Glyma.13G211000 Glycine max HOM05D000007 ORTHO05D000017 1.7e-06 57.4 50 50.0
AUR62040420 Chenopodium quinoa HOM05D000007 ORTHO05D000039 2.2e-06 57.0 55 49.1
Dinv38256 Davidia involucrata HOM05D000007 ORTHO05D000017 2.2e-06 57.0 42 57.1
Eucgr.I00152 Eucalyptus grandis HOM05D000007 ORTHO05D000039 2.2e-06 57.0 153 30.1
FAN10G0938 Fragaria x ananassa HOM05D000007 ORTHO05D000039 2.2e-06 57.0 149 32.2
Gohir.A13G144400 Gossypium hirsutum HOM05D000007 ORTHO05D000039 2.2e-06 57.0 121 31.4
Lj1A671T55 Lonicera japonica HOM05D000007 ORTHO05D000039 2.2e-06 57.0 46 52.2
Lj6C617T6 Lonicera japonica HOM05D000007 ORTHO05D010342 2.2e-06 57.0 206 25.7
PSO135G0446 Papaver somniferum HOM05D000007 ORTHO05D000017 2.2e-06 57.0 125 28.8
PSO384G4820 Papaver somniferum HOM05D000007 ORTHO05D000017 2.2e-06 57.0 49 57.1
Rhsim04G0156200 Rhododendron simsii HOM05D000007 ORTHO05D000039 2.2e-06 57.0 210 24.8
RcHm_v2.0_Chr7g0233331 Rosa chinensis HOM05D000007 ORTHO05D000039 2.2e-06 57.0 46 58.7
Sopen07g027190 Solanum pennellii HOM05D000007 ORTHO05D000039 2.2e-06 57.0 50 50.0
TAR369G0473 Trochodendron aralioides HOM05D000007 ORTHO05D001644 2.2e-06 57.0 67 37.3
vmacro09289 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 2.2e-06 57.0 52 51.9
vmacro22920 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 2.2e-06 57.0 52 51.9
EL10Ac9g20886 Beta vulgaris HOM05D000007 ORTHO05D000039 2.8e-06 56.6 45 53.3
Dinv12702 Davidia involucrata HOM05D000007 ORTHO05D000039 2.8e-06 56.6 151 31.1
FAN16G1155 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.8e-06 56.6 65 38.5
Glyma.02G079600 Glycine max HOM05D000007 ORTHO05D000017 2.8e-06 56.6 60 41.7
Glyma.18G274800 Glycine max HOM05D000007 ORTHO05D000017 2.8e-06 56.6 57 43.9
Lj1P665T16 Lonicera japonica HOM05D000007 ORTHO05D000039 2.8e-06 56.6 138 30.4
Lj1P669T8 Lonicera japonica HOM05D000007 ORTHO05D000039 2.8e-06 56.6 142 32.4
Lj5C747T4 Lonicera japonica HOM05D000007 ORTHO05D000039 2.8e-06 56.6 51 54.9
Os12g0164300 Oryza sativa ssp. japonica HOM05D000007 ORTHO05D000017 2.8e-06 56.6 57 47.4
Phvul.006G157000 Phaseolus vulgaris HOM05D000007 ORTHO05D000017 2.8e-06 56.6 50 50.0
QL04p019040 Quercus lobata HOM05D000007 ORTHO05D000039 2.8e-06 56.6 155 27.7
Sopen10g004400 Solanum pennellii HOM05D000007 ORTHO05D000039 2.8e-06 56.6 140 31.4
PGSC0003DMG402020445 Solanum tuberosum HOM05D000007 ORTHO05D000039 2.8e-06 56.6 46 54.3
Actinidia11172 Actinidia chinensis HOM05D000007 ORTHO05D000039 3.7e-06 56.2 118 28.8
CANSAT56G1116 Cannabis sativa HOM05D000007 ORTHO05D000017 3.7e-06 56.2 145 35.9
AUR62033045 Chenopodium quinoa HOM05D000007 ORTHO05D000039 3.7e-06 56.2 42 54.8
Cc03_g07520 Coffea canephora HOM05D000007 ORTHO05D000017 3.7e-06 56.2 64 39.1
DCAR_020301 Daucus carota HOM05D000007 ORTHO05D000017 3.7e-06 56.2 43 53.5
Migut.M00307 Erythranthe guttata HOM05D000007 ORTHO05D000039 3.7e-06 56.2 131 32.8
Glyma.16G163966 Glycine max HOM05D000007 ORTHO05D000017 3.7e-06 56.2 60 40.0
Lj8C10T4 Lonicera japonica HOM05D000007 ORTHO05D000039 3.7e-06 56.2 122 31.1
Nitab4.5_0003693g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000039 3.7e-06 56.2 48 50.0
PSO478G1605 Papaver somniferum HOM05D000007 ORTHO05D000017 3.7e-06 56.2 42 57.1
Peaxi162Scf00469g00137 Petunia axillaris HOM05D000007 ORTHO05D000039 3.7e-06 56.2 48 47.9
Prupe.2G264700 Prunus persica HOM05D000007 ORTHO05D000017 3.7e-06 56.2 55 43.6
QL04p019171 Quercus lobata HOM05D000007 ORTHO05D000039 3.7e-06 56.2 158 31.0
QL08p042875 Quercus lobata HOM05D000007 ORTHO05D000039 3.7e-06 56.2 53 47.2
Rhsim07G0052600 Rhododendron simsii HOM05D000007 ORTHO05D000039 3.7e-06 56.2 46 54.3
PGSC0003DMG400010275 Solanum tuberosum HOM05D000007 ORTHO05D000039 3.7e-06 56.2 140 30.7
PGSC0003DMG402021671 Solanum tuberosum HOM05D000007 ORTHO05D000039 3.7e-06 56.2 154 29.9
Aqoxy6G01619 Aquilegia oxysepala HOM05D021765 ORTHO05D018413 4.8e-06 55.8 54 48.1
CSS0036577 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 4.8e-06 55.8 46 56.5
CAN.G626.8 Capsicum annuum HOM05D000007 ORTHO05D000017 4.8e-06 55.8 45 55.6
CAN.G626.9 Capsicum annuum HOM05D000007 ORTHO05D000017 4.8e-06 55.8 185 27.6
Haze_08568 Corylus avellana HOM05D000007 ORTHO05D000039 4.8e-06 55.8 54 48.1
Dinv38197 Davidia involucrata HOM05D000056 ORTHO05D000019 4.8e-06 55.8 189 27.5
Hma1.2p1_0187F.1_g081920 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 4.8e-06 55.8 45 55.6
Lj3C973T7 Lonicera japonica HOM05D000007 ORTHO05D000017 4.8e-06 55.8 52 50.0
Lju1074C2T0 Lonicera japonica HOM05D000007 ORTHO05D000039 4.8e-06 55.8 150 29.3
Medtr2g048580 Medicago truncatula HOM05D000007 ORTHO05D000017 4.8e-06 55.8 45 53.3
QL04p049997 Quercus lobata HOM05D000007 ORTHO05D000039 4.8e-06 55.8 178 28.7
QL07p003322 Quercus lobata HOM05D000007 ORTHO05D000039 4.8e-06 55.8 144 31.2
Solyc07g055020.3 Solanum lycopersicum HOM05D000007 ORTHO05D000039 4.8e-06 55.8 46 52.2
Solyc10g008580.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 4.8e-06 55.8 145 30.3
arahy.Tifrunner.gnm1.ann1.IXSG1G Arachis hypogaea HOM05D000007 ORTHO05D000017 6.3e-06 55.5 53 45.3
arahy.Tifrunner.gnm1.ann1.JH40ZX Arachis hypogaea HOM05D000007 ORTHO05D000017 6.3e-06 55.5 53 45.3
FvH4_7g08973 Fragaria vesca HOM05D000007 ORTHO05D000039 6.3e-06 55.5 43 58.1
Lj1C674T8 Lonicera japonica HOM05D000007 ORTHO05D000039 6.3e-06 55.5 46 50.0
Lj2A946T25 Lonicera japonica HOM05D001729 ORTHO05D001155 6.3e-06 55.5 71 36.6
Lj5P838T12 Lonicera japonica HOM05D000007 ORTHO05D000039 6.3e-06 55.5 42 57.1
Oeu028341.1 Olea europaea HOM05D000007 ORTHO05D000039 6.3e-06 55.5 43 53.5
Peaxi162Scf00246g00071 Petunia axillaris HOM05D000007 ORTHO05D000017 6.3e-06 55.5 55 49.1
Peaxi162Scf00469g00073 Petunia axillaris HOM05D000007 ORTHO05D000039 6.3e-06 55.5 49 53.1
TWI31G0212 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 6.3e-06 55.5 45 55.6
vmacro13636 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 6.3e-06 55.5 46 56.5
GSVIVG01031693001 Vitis vinifera HOM05D000007 ORTHO05D000017 6.3e-06 55.5 56 42.9
EL10Ac2g02458 Beta vulgaris HOM05D000007 ORTHO05D000039 8.2e-06 55.1 115 30.4
Cfa020534 Carpinus fangiana HOM05D000007 ORTHO05D000039 8.2e-06 55.1 45 53.3
AUR62032124 Chenopodium quinoa HOM05D000007 ORTHO05D000039 8.2e-06 55.1 102 32.4
Haze_09491 Corylus avellana HOM05D000007 ORTHO05D000039 8.2e-06 55.1 58 41.4
Dinv12703 Davidia involucrata HOM05D000007 ORTHO05D000039 8.2e-06 55.1 75 38.7
Migut.L00223 Erythranthe guttata HOM05D000007 ORTHO05D000017 8.2e-06 55.1 68 44.1
Migut.L00613 Erythranthe guttata HOM05D000007 ORTHO05D000017 8.2e-06 55.1 54 50.0
FvH4_3g18231 Fragaria vesca HOM05D000007 ORTHO05D000017 8.2e-06 55.1 57 40.4
FAN02G1127 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.2e-06 55.1 45 53.3
FAN05G0839 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.2e-06 55.1 45 53.3
Glyma.15G101600 Glycine max HOM05D000007 ORTHO05D000017 8.2e-06 55.1 50 48.0
Lj1C596T1 Lonicera japonica HOM05D000007 ORTHO05D000039 8.2e-06 55.1 45 57.8
Lj1P653T16 Lonicera japonica HOM05D000007 ORTHO05D000039 8.2e-06 55.1 46 56.5
QL07p035948 Quercus lobata HOM05D000007 ORTHO05D000039 8.2e-06 55.1 45 51.1
RcHm_v2.0_Chr5g0030551 Rosa chinensis HOM05D000007 ORTHO05D000017 8.2e-06 55.1 57 42.1
vmacro00490 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 8.2e-06 55.1 45 55.6
vmacro19993 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 8.2e-06 55.1 45 55.6


User provided reference genes

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