Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 9.7e-86 320.1 159 100.0
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 9.1e-76 287.0 156 90.4
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.2e-75 286.6 156 89.7
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 7.7e-75 283.9 158 89.2
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.8e-74 281.6 158 87.3
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 4.2e-73 278.1 157 87.3
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 5.5e-73 277.7 155 87.1
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.7e-72 275.4 158 85.4
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.7e-72 275.4 158 85.4
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 6.1e-72 274.2 155 85.2
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 8.0e-72 273.9 158 84.2
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 3.0e-71 271.9 156 82.7
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.0e-71 271.6 156 82.7
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.0e-71 271.6 156 82.7
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 4.0e-71 271.6 158 81.0
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 4.0e-71 271.6 156 83.3
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 5.2e-71 271.2 158 83.5
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 6.8e-71 270.8 156 84.0
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 6.8e-71 270.8 155 83.9
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.2e-70 270.0 156 82.7
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.2e-70 270.0 156 83.3
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.5e-70 269.6 156 81.4
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.0e-70 269.2 149 86.6
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.6e-70 268.9 158 82.3
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 3.4e-70 268.5 158 81.6
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 4.4e-70 268.1 155 83.2
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 7.5e-70 267.3 156 81.4
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.3e-69 266.5 158 82.3
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.3e-69 266.5 153 83.0
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.7e-69 266.2 158 80.4
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.8e-69 265.4 156 81.4
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 2.8e-69 265.4 152 84.2
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 3.7e-69 265.0 155 84.5
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 4.8e-69 264.6 156 82.1
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.8e-69 264.6 156 80.1
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 4.8e-69 264.6 158 79.7
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 6.3e-69 264.2 156 82.1
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 6.3e-69 264.2 156 83.3
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 6.3e-69 264.2 158 81.0
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 6.3e-69 264.2 158 81.0
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 8.3e-69 263.8 156 81.4
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.1e-68 263.5 158 78.5
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.1e-68 263.5 158 82.9
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.1e-68 263.5 158 79.7
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.1e-68 263.5 158 82.9
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.4e-68 263.1 158 79.1
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-68 263.1 158 79.1
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.8e-68 262.7 158 78.5
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.8e-68 262.7 158 79.1
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.8e-68 262.7 158 82.9
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.8e-68 262.7 158 82.9
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.4e-68 262.3 154 83.8
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 3.1e-68 261.9 155 81.3
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.1e-68 261.9 158 78.5
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 3.1e-68 261.9 156 79.5
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.1e-68 261.9 158 78.5
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 5.4e-68 261.2 158 78.5
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 7.0e-68 260.8 158 78.5
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 7.0e-68 260.8 158 80.4
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.6e-67 259.6 158 79.1
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.0e-67 259.2 158 78.5
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 2.7e-67 258.8 158 77.8
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 2.7e-67 258.8 156 81.4
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 3.5e-67 258.5 158 81.0
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 4.5e-67 258.1 156 78.2
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 5.9e-67 257.7 155 79.4
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 5.9e-67 257.7 156 79.5
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.0e-66 256.9 155 80.6
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.3e-66 256.5 156 78.2
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 2.9e-66 255.4 156 76.3
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 2.9e-66 255.4 158 75.3
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.9e-66 255.4 158 77.2
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 3.8e-66 255.0 158 78.5
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.0e-66 254.6 155 77.4
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 6.5e-66 254.2 158 77.8
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 6.5e-66 254.2 158 76.6
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 6.5e-66 254.2 156 78.2
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 8.5e-66 253.8 156 77.6
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 8.5e-66 253.8 156 76.9
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.1e-65 253.4 158 77.2
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.5e-65 253.1 156 76.3
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.5e-65 253.1 154 79.2
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.5e-65 253.1 156 76.3
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.9e-65 252.7 154 78.6
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.5e-65 252.3 155 79.4
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 4.2e-65 251.5 156 75.6
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 4.2e-65 251.5 156 75.6
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 5.5e-65 251.1 156 75.6
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 5.5e-65 251.1 156 75.6
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 7.2e-65 250.8 155 77.4
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 7.2e-65 250.8 157 74.5
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.7e-64 248.8 152 80.3
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.7e-64 248.8 158 73.4
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 8.0e-64 247.3 154 76.6
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.0e-63 246.9 152 77.6
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.0e-63 246.9 152 77.6
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.4e-63 246.5 157 76.4
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 3.0e-63 245.4 152 77.6
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 6.8e-63 244.2 156 75.6
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.5e-62 243.0 152 77.0
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.5e-62 243.0 151 78.1
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.6e-62 242.3 158 69.6
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 3.4e-62 241.9 150 78.0
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 5.7e-62 241.1 157 73.2
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 5.7e-62 241.1 152 78.3
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 7.5e-62 240.7 150 74.7
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.7e-61 238.4 159 72.3
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 4.9e-61 238.0 153 75.8
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 6.3e-61 237.7 153 75.8
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 6.3e-61 237.7 153 76.5
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.8e-60 236.1 155 74.2
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.8e-60 236.1 156 75.0
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.8e-60 236.1 158 69.6
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 4.1e-60 235.0 148 74.3
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 7.0e-60 234.2 156 71.2
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.6e-59 233.0 158 69.0
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 3.5e-59 231.9 153 74.5
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 5.9e-59 231.1 158 69.6
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 7.7e-59 230.7 149 75.2
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.7e-58 229.6 159 69.8
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.3e-58 229.2 156 71.8
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.9e-57 226.1 151 74.8
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.9e-57 226.1 158 72.8
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 2.5e-57 225.7 152 70.4
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 5.5e-57 224.6 150 70.0
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 7.2e-57 224.2 149 72.5
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 9.5e-57 223.8 159 69.8
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 9.5e-57 223.8 157 68.8
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.1e-56 222.6 137 80.3
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 6.1e-56 221.1 151 72.2
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.1e-56 221.1 151 72.2
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 3.0e-55 218.8 150 69.3
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.8e-55 217.6 151 70.9
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.2e-54 216.9 151 70.9
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.9e-53 211.5 146 69.2
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-52 209.9 165 65.5
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.8e-52 209.5 147 66.0
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 4.1e-52 208.4 121 78.5
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 4.1e-52 208.4 158 67.7
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 4.1e-52 208.4 121 80.2
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 9.2e-52 207.2 137 76.6
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 5.9e-51 204.5 143 65.0
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 7.8e-51 204.1 146 66.4
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.9e-50 201.8 125 81.6
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 8.6e-50 200.7 157 62.4
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.9e-49 199.5 149 67.8
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.9e-49 199.5 142 65.5
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 3.3e-49 198.7 144 70.1
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 9.5e-49 197.2 127 77.2
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 2.1e-48 196.1 148 62.8
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.8e-48 195.7 127 74.8
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 6.8e-47 191.0 142 61.3
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 8.9e-47 190.7 141 66.7
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.2e-46 190.3 156 62.8
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.4e-44 182.6 129 69.0
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 7.0e-44 181.0 153 59.5
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 9.2e-44 180.6 149 67.1
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.2e-43 180.3 142 57.7
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.3e-42 176.8 156 60.9
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.0e-42 175.6 156 60.3
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 6.6e-42 174.5 158 60.1
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.5e-41 173.3 156 59.6
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.7e-37 159.8 116 70.7
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 8.3e-37 157.5 99 77.8
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.3e-34 149.4 90 80.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.9e-29 131.7 139 45.3
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.0e-26 124.0 73 78.1
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.3e-26 122.9 81 69.1
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.5e-25 120.2 76 75.0
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.5e-25 120.2 81 67.9
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.1e-23 114.0 156 46.2
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.9e-17 93.2 79 57.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.9e-13 79.3 51 76.5
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 8.4e-13 77.8 180 33.9
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.9e-12 76.6 120 40.8
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-12 75.1 52 67.3
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 1.7e-10 70.1 78 47.4
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 8.1e-08 61.2 64 39.1
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 1.5e-06 57.0 32 78.1
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 2.0e-06 56.6 183 26.8
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 2.6e-06 56.2 32 78.1


User provided reference genes

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