Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 4.8e-100 367.9 189 100.0
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 3.5e-50 202.2 143 72.7
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 7.3e-48 194.5 143 72.0
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 2.1e-47 193.0 145 70.3
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 2.8e-47 192.6 145 69.7
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.8e-47 192.6 143 68.5
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 3.6e-47 192.2 146 69.2
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 3.6e-47 192.2 143 69.9
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 6.2e-47 191.4 146 68.5
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 6.2e-47 191.4 146 67.8
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 6.2e-47 191.4 145 69.7
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 8.1e-47 191.0 147 66.7
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 1.1e-46 190.7 143 68.5
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 1.4e-46 190.3 146 67.1
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 1.8e-46 189.9 146 65.1
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 1.8e-46 189.9 143 67.8
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.8e-46 189.9 146 67.1
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.4e-46 189.5 146 65.8
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 2.4e-46 189.5 139 67.6
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.4e-46 189.5 143 70.6
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 3.1e-46 189.1 147 67.3
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 4.0e-46 188.7 144 68.8
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 4.0e-46 188.7 145 69.7
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 5.2e-46 188.3 145 69.0
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 5.2e-46 188.3 144 68.8
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 5.2e-46 188.3 145 69.7
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 8.9e-46 187.6 145 69.0
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 1.2e-45 187.2 145 67.6
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 1.5e-45 186.8 145 67.6
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 2.0e-45 186.4 146 67.1
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.0e-45 186.4 143 67.1
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.0e-45 186.4 143 67.1
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 2.0e-45 186.4 145 68.3
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 2.6e-45 186.0 145 66.9
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.6e-45 186.0 143 67.1
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 3.4e-45 185.7 145 67.6
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 5.8e-45 184.9 143 67.1
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 9.9e-45 184.1 146 65.8
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 9.9e-45 184.1 143 65.7
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.3e-44 183.7 140 69.3
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 1.3e-44 183.7 147 66.7
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.7e-44 183.3 143 65.7
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 2.9e-44 182.6 143 65.7
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 2.9e-44 182.6 145 65.5
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.9e-44 182.6 145 67.6
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 2.9e-44 182.6 145 67.6
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 3.8e-44 182.2 142 65.5
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.8e-44 182.2 146 67.1
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 3.8e-44 182.2 146 67.1
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 3.8e-44 182.2 145 66.2
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 3.8e-44 182.2 146 63.7
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 6.4e-44 181.4 143 66.4
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 6.4e-44 181.4 142 66.2
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 8.4e-44 181.0 143 66.4
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 8.4e-44 181.0 145 66.2
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.1e-43 180.6 145 66.9
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.1e-43 180.6 145 64.8
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 1.4e-43 180.3 145 66.9
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 2.4e-43 179.5 145 65.5
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 3.2e-43 179.1 144 67.4
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 3.2e-43 179.1 145 65.5
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 3.2e-43 179.1 145 66.2
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 3.2e-43 179.1 140 65.0
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 9.2e-43 177.6 147 62.6
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 1.2e-42 177.2 172 58.1
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 2.1e-42 176.4 145 64.1
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 2.7e-42 176.0 143 65.0
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 3.5e-42 175.6 143 62.2
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 3.5e-42 175.6 147 62.6
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.5e-42 175.6 147 62.6
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.5e-42 175.6 147 62.6
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.3e-41 173.7 147 61.9
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 3.0e-41 172.6 145 63.4
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 3.9e-41 172.2 144 65.3
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.5e-40 169.5 140 63.6
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 3.3e-40 169.1 146 63.0
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 4.3e-40 168.7 145 63.4
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 9.6e-40 167.5 145 60.7
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 9.6e-40 167.5 147 61.2
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 3.6e-39 165.6 145 62.8
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 3.6e-39 165.6 143 60.8
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 4.7e-39 165.2 146 62.3
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 4.7e-39 165.2 143 60.8
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 1.1e-38 164.1 146 61.6
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.8e-38 163.3 140 62.1
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 1.8e-38 163.3 140 62.1
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.8e-38 163.3 145 61.4
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 3.1e-38 162.5 140 62.1
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 4.0e-38 162.2 145 60.0
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 4.0e-38 162.2 145 61.4
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 5.3e-38 161.8 195 49.7
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 5.8e-37 158.3 146 61.6
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 5.8e-37 158.3 142 61.3
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 7.6e-37 157.9 151 59.6
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 1.3e-36 157.1 152 59.2
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 2.2e-36 156.4 145 60.7
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 4.9e-36 155.2 139 60.4
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 6.4e-36 154.8 152 58.6
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 1.9e-35 153.3 145 58.6
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 1.9e-35 153.3 139 59.7
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 1.9e-35 153.3 139 59.7
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 4.2e-35 152.1 139 61.2
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 4.2e-35 152.1 139 61.2
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 1.2e-34 150.6 139 59.0
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 2.1e-34 149.8 144 56.2
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 3.9e-33 145.6 144 54.9
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 2.5e-32 142.9 145 56.6
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 9.6e-32 141.0 146 56.2
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 3.6e-31 139.0 103 68.9
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.8e-30 136.7 139 54.0
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 5.3e-30 135.2 140 50.7
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 1.5e-29 133.7 105 70.5
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 3.8e-28 129.0 143 51.7
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 4.9e-28 128.6 103 67.0
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 8.4e-28 127.9 133 56.4
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 1.4e-27 127.1 103 66.0
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 1.9e-27 126.7 87 74.7
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 1.9e-27 126.7 147 49.0
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 4.6e-26 122.1 145 48.3
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 6.0e-26 121.7 143 49.7
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 3.9e-25 119.0 104 62.5
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 1.9e-24 116.7 96 64.6
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 4.3e-24 115.5 146 47.9
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 1.5e-21 107.1 173 38.7
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 2.6e-21 106.3 109 56.0
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 3.4e-21 105.9 87 58.6
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 6.4e-20 101.7 112 49.1
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 3.5e-18 95.9 147 42.2
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 1.0e-17 94.4 77 63.6
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.9e-17 92.4 68 75.0
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 5.1e-17 92.0 70 70.0
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 6.7e-17 91.7 143 42.7
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 8.7e-17 91.3 191 39.3
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 9.6e-16 87.8 157 37.6
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 4.8e-15 85.5 78 57.7
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 5.3e-14 82.0 135 38.5
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 2.6e-13 79.7 66 62.1
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 4.5e-13 79.0 70 65.7
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 1.0e-12 77.8 70 62.9
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 8.4e-12 74.7 132 37.9
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.1e-11 74.3 72 63.9
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 4.2e-11 72.4 89 46.1
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-10 68.9 73 52.1
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 6.1e-10 68.6 51 66.7
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 7.9e-10 68.2 111 46.8
Lj2P257T35 Lonicera japonica HOM05D008183 ORTHO05D007254 1.1e-08 64.3 43 76.7
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 6.3e-07 58.5 39 69.2
Lj3P354T13 Lonicera japonica HOM05D008183 ORTHO05D007254 1.8e-06 57.0 43 72.1
Lj2C40G9 Lonicera japonica HOM05D008183 ORTHO05D007254 4.1e-06 55.8 44 68.2
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 6.9e-06 55.1 115 33.9


User provided reference genes

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