Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 3.2e-195 684.9 336 100.0
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 3.2e-155 552.0 327 82.0
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 4.8e-151 538.1 327 80.1
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.2e-148 529.3 326 79.1
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.2e-148 529.3 326 79.1
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 1.8e-145 519.6 333 78.4
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.1e-142 510.4 338 75.7
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 5.9e-141 504.6 327 75.5
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 4.2e-139 498.4 327 74.9
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 9.4e-139 497.3 326 76.4
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.0e-137 493.8 325 75.4
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 3.9e-137 491.9 325 73.5
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 3.9e-137 491.9 327 73.7
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.9e-137 491.9 327 74.6
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 5.1e-137 491.5 327 73.1
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 6.7e-137 491.1 326 72.7
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.1e-136 490.3 341 72.7
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.5e-136 490.0 327 74.0
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.5e-136 490.0 342 73.1
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 5.7e-136 488.0 326 71.8
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 2.8e-135 485.7 327 73.7
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 3.7e-135 485.3 326 71.8
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 4.1e-134 481.9 330 72.7
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 3.8e-132 475.3 325 73.2
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 6.5e-132 474.6 325 72.9
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 8.5e-132 474.2 329 72.0
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.4e-131 473.4 342 69.9
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.9e-131 473.0 325 72.3
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 1.9e-131 473.0 327 71.3
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 3.2e-131 472.2 332 72.0
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.6e-130 469.9 341 70.4
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 2.7e-130 469.2 329 72.0
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 3.6e-130 468.8 327 71.3
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.0e-129 467.2 328 71.3
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.0e-129 467.2 327 71.6
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.4e-129 466.8 325 72.0
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 1.8e-129 466.5 313 73.5
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 6.7e-129 464.5 331 71.3
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.5e-128 463.4 331 70.4
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.0e-128 463.0 327 70.3
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 3.3e-128 462.2 325 70.2
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 1.7e-127 459.9 324 70.7
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.8e-127 459.1 323 70.3
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 3.7e-127 458.8 324 71.3
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.2e-127 457.6 327 70.0
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 1.1e-126 457.2 325 71.7
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 1.1e-126 457.2 330 71.8
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.1e-126 455.7 324 69.8
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 3.1e-126 455.7 325 71.7
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.1e-126 455.3 324 69.8
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 5.3e-126 454.9 330 70.9
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 7.0e-126 454.5 330 68.2
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 9.1e-126 454.1 324 69.1
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 3.5e-125 452.2 327 70.9
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.0e-124 450.7 324 69.1
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.2e-124 449.5 324 69.4
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 2.9e-124 449.1 326 69.6
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 3.8e-124 448.7 326 69.3
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 8.5e-124 447.6 341 68.3
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 1.1e-123 447.2 328 67.1
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.1e-123 447.2 344 66.6
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 3.2e-123 445.7 324 69.1
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.2e-123 445.3 409 57.9
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 5.5e-123 444.9 327 69.7
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 5.5e-123 444.9 326 69.0
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.6e-122 443.4 324 68.5
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.6e-122 443.4 331 66.5
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 2.1e-122 443.0 329 69.0
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 2.7e-122 442.6 321 68.8
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.6e-122 442.2 327 70.0
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 3.6e-122 442.2 325 68.0
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 6.1e-122 441.4 327 70.3
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 8.0e-122 441.0 328 67.1
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 8.0e-122 441.0 352 66.8
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.8e-121 439.9 325 67.7
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.3e-121 439.5 426 55.6
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 6.7e-121 438.0 325 67.4
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 1.2e-120 437.2 327 68.5
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 5.7e-120 434.9 319 70.8
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.3e-119 433.7 327 66.4
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.8e-119 432.6 327 66.7
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 6.3e-119 431.4 325 66.2
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 7.0e-118 427.9 298 69.5
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 9.1e-118 427.6 326 65.3
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.2e-117 427.2 346 66.2
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.6e-117 426.8 327 66.4
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 2.9e-116 422.5 400 57.5
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 1.9e-115 419.9 327 67.6
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 3.6e-114 415.6 327 66.1
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 6.1e-114 414.8 326 67.5
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 6.1e-114 414.8 342 64.9
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 5.2e-113 411.8 327 66.7
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 6.8e-113 411.4 327 61.2
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 8.8e-113 411.0 497 48.1
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.4e-112 408.7 332 65.7
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 7.5e-112 407.9 328 64.9
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 9.8e-112 407.5 329 64.4
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 9.8e-112 407.5 329 65.0
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.1e-110 404.1 340 62.4
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.8e-110 403.3 329 64.4
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.3e-108 397.1 333 62.2
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 3.8e-108 395.6 329 64.7
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 3.8e-108 395.6 329 64.7
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 8.6e-108 394.4 329 63.2
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 8.6e-108 394.4 329 64.7
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.9e-107 393.3 331 63.1
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 3.3e-107 392.5 328 63.7
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 5.5e-107 391.7 329 62.9
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 7.2e-107 391.3 329 63.8
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 9.5e-107 391.0 329 63.8
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 9.5e-107 391.0 329 64.1
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.6e-106 390.2 342 59.6
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 3.6e-106 389.0 329 64.1
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 3.6e-106 389.0 329 64.1
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 6.1e-106 388.3 329 64.1
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 1.0e-105 387.5 329 63.2
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 6.8e-105 384.8 325 61.5
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 6.8e-105 384.8 325 63.4
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 6.8e-105 384.8 327 63.9
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 3.7e-103 379.0 342 59.6
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 1.8e-102 376.7 324 63.3
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 2.4e-102 376.3 328 63.1
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 7.0e-102 374.8 345 56.5
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 1.3e-100 370.5 325 60.0
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 5.6e-99 365.2 329 61.1
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 7.3e-99 364.8 328 57.3
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 6.8e-97 358.2 328 58.2
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 8.9e-97 357.8 329 60.2
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 1.5e-96 357.1 329 57.8
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 4.3e-91 339.0 308 61.4
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 2.8e-90 336.3 325 56.9
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 7.0e-86 321.6 299 56.2
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.5e-83 313.2 332 50.6
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.1e-77 293.5 206 70.9
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.3e-76 290.8 312 54.8
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 1.1e-75 287.7 330 50.3
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 4.4e-72 275.8 237 69.2
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.4e-70 270.0 230 63.9
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 3.6e-66 256.1 365 44.4
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 6.2e-66 255.4 254 56.3
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 6.2e-66 255.4 254 56.3
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.1e-65 254.6 230 63.9
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 2.4e-65 253.4 168 74.4
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 1.7e-63 247.3 344 43.6
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 4.8e-58 229.2 348 42.0
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 2.4e-57 226.9 204 60.3
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 6.4e-55 218.8 345 39.7
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 6.0e-53 212.2 135 77.8
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 9.6e-51 204.9 321 41.1
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.1e-49 201.4 133 72.2
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 3.4e-48 196.4 205 48.8
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 4.2e-46 189.5 355 34.9
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 6.9e-41 172.2 88 85.2
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 1.4e-30 137.9 74 74.3
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.9e-20 103.2 76 59.2
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 8.2e-18 95.5 78 64.1
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.4e-17 94.7 328 28.7
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.1e-17 93.2 358 26.3
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.9e-15 87.0 63 63.5
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 2.8e-10 70.5 48 66.7


User provided reference genes

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