Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 7.6e-88 327.0 152 100.0
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 6.9e-65 250.8 125 90.4
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 1.2e-64 250.0 128 89.8
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.7e-63 246.1 127 87.4
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 2.2e-63 245.7 129 87.6
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 2.9e-63 245.4 122 91.0
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 6.5e-63 244.2 123 89.4
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 1.4e-62 243.0 125 88.0
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 1.4e-62 243.0 119 94.1
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 1.9e-62 242.7 122 90.2
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 1.9e-62 242.7 123 87.8
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 2.5e-62 242.3 126 86.5
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.5e-62 242.3 125 86.4
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 2.5e-62 242.3 126 85.7
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 2.5e-62 242.3 120 92.5
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 3.2e-62 241.9 131 86.3
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 5.5e-62 241.1 125 87.2
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 5.5e-62 241.1 125 85.6
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 7.2e-62 240.7 125 88.0
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 7.2e-62 240.7 126 84.9
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 7.2e-62 240.7 125 86.4
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 7.2e-62 240.7 123 87.8
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 7.2e-62 240.7 125 86.4
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 9.3e-62 240.4 126 84.9
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 2.1e-61 239.2 134 82.1
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 2.7e-61 238.8 125 87.2
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 4.6e-61 238.0 126 83.3
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 4.6e-61 238.0 126 84.1
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 4.6e-61 238.0 126 84.1
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 6.1e-61 237.7 147 76.9
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 7.9e-61 237.3 134 80.6
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 7.9e-61 237.3 125 84.0
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 1.0e-60 236.9 121 89.3
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.0e-60 236.9 132 81.1
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 1.3e-60 236.5 120 88.3
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 1.3e-60 236.5 120 88.3
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.3e-60 236.5 122 87.7
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.3e-60 236.5 122 87.7
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 1.8e-60 236.1 126 83.3
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 1.8e-60 236.1 126 83.3
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 3.9e-60 235.0 121 88.4
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 3.9e-60 235.0 140 79.3
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 3.9e-60 235.0 123 86.2
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 3.9e-60 235.0 121 87.6
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 3.9e-60 235.0 118 90.7
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 5.1e-60 234.6 121 87.6
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 5.1e-60 234.6 135 78.5
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 6.7e-60 234.2 125 84.8
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 8.7e-60 233.8 125 83.2
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 8.7e-60 233.8 121 87.6
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 1.5e-59 233.0 125 83.2
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 2.5e-59 232.3 124 83.9
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 3.3e-59 231.9 125 83.2
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 4.3e-59 231.5 121 86.8
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 5.7e-59 231.1 126 81.0
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 5.7e-59 231.1 122 85.2
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 5.7e-59 231.1 126 81.7
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 7.4e-59 230.7 128 82.0
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 7.4e-59 230.7 120 86.7
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 9.7e-59 230.3 125 83.2
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 1.3e-58 229.9 124 83.1
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 2.2e-58 229.2 123 83.7
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 2.8e-58 228.8 126 81.0
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 4.8e-58 228.0 128 78.9
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 6.3e-58 227.6 139 77.0
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 6.3e-58 227.6 123 82.1
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 8.2e-58 227.3 123 81.3
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 1.1e-57 226.9 120 83.3
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 1.4e-57 226.5 126 79.4
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 2.4e-57 225.7 121 85.1
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 3.1e-57 225.3 126 80.2
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 6.9e-57 224.2 154 68.8
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 6.9e-57 224.2 123 81.3
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 9.0e-57 223.8 123 81.3
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 1.2e-56 223.4 128 78.9
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.5e-56 223.0 125 82.4
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 1.0e-55 220.3 132 75.8
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.3e-55 219.9 128 74.2
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 1.7e-55 219.5 132 75.8
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 5.0e-55 218.0 115 85.2
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 6.5e-55 217.6 143 70.6
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.4e-54 216.5 143 70.6
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 7.2e-54 214.2 192 58.3
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 9.4e-54 213.8 121 76.0
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 9.4e-54 213.8 121 76.0
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 1.6e-53 213.0 127 74.8
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 1.6e-53 213.0 171 63.2
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 8.8e-52 207.2 123 73.2
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 3.3e-51 205.3 124 79.8
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 6.3e-50 201.1 120 78.3
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 1.1e-49 200.3 133 73.7
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 3.4e-48 195.3 121 71.9
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 3.4e-48 195.3 123 69.9
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.7e-47 193.0 118 73.7
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 2.9e-47 192.2 103 86.4
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 1.4e-46 189.9 123 74.0
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 3.2e-46 188.7 123 72.4
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 5.5e-46 188.0 113 71.7
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 3.6e-45 185.3 178 55.6
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 1.4e-44 183.3 138 65.2
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 6.7e-44 181.0 132 67.4
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 1.7e-42 176.4 126 64.3
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 4.8e-42 174.9 91 85.7
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 1.8e-41 172.9 124 57.3
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 3.1e-41 172.2 92 84.8
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 5.0e-39 164.9 111 64.9
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 1.5e-38 163.3 111 68.5
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 1.9e-38 162.9 113 60.2
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 5.5e-38 161.4 84 82.1
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 1.9e-30 136.3 89 74.2
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 3.2e-30 135.6 91 72.5
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 4.2e-30 135.2 102 55.9
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.6e-29 133.3 98 65.3
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 3.0e-28 129.0 106 50.9
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 2.6e-27 125.9 63 88.9
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 4.4e-27 125.2 121 53.7
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 4.4e-27 125.2 64 89.1
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 1.7e-26 123.2 63 88.9
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 2.8e-26 122.5 60 90.0
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 4.8e-26 121.7 65 86.2
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 2.4e-25 119.4 60 83.3
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 2.4e-25 119.4 112 43.8
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 9.1e-25 117.5 104 50.0
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 2.7e-24 115.9 96 53.1
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 3.5e-24 115.5 68 75.0
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 2.9e-23 112.5 188 41.0
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 3.2e-22 109.0 95 48.4
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 1.2e-19 100.5 93 41.9
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 1.2e-19 100.5 104 46.2
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 7.3e-14 81.3 41 92.7
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 2.8e-13 79.3 119 39.5
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 8.0e-13 77.8 42 76.2
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 1.4e-12 77.0 64 64.1
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 5.2e-12 75.1 40 87.5
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 7.5e-11 71.2 35 82.9
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 7.5e-11 71.2 35 82.9
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 9.8e-11 70.9 43 72.1
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 2.9e-10 69.3 48 64.6
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 1.2e-08 63.9 111 38.7
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 2.5e-06 56.2 29 82.8
BolC6t35595H Brassica oleracea HOM05D040450 ORTHO05D033487 2.5e-06 56.2 45 57.8


User provided reference genes

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