Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A215G56 Lonicera japonica HOM05D003511 ORTHO05D004403 2.3e-47 191.8 90 100.0
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 1.4e-20 102.8 72 66.7
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 1.8e-20 102.4 72 62.5
Atru.chr5.2456 Acer truncatum HOM05D003511 ORTHO05D004403 2.4e-20 102.1 72 62.5
Dinv15773 Davidia involucrata HOM05D003511 ORTHO05D004403 6.8e-20 100.5 72 63.9
MD10G1099400 Malus domestica HOM05D003511 ORTHO05D004403 2.0e-19 99.0 72 59.7
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 2.0e-19 99.0 72 65.3
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 2.0e-19 99.0 72 65.3
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 5.8e-19 97.4 83 57.8
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 7.6e-19 97.1 73 60.3
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 7.6e-19 97.1 75 64.0
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 1.3e-18 96.3 72 59.7
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 1.7e-18 95.9 72 56.9
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 2.2e-18 95.5 72 61.1
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 2.9e-18 95.1 72 61.1
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 2.9e-18 95.1 72 62.5
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 3.8e-18 94.7 72 61.1
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 3.8e-18 94.7 72 61.1
Sabra16G0187700 Salix brachista HOM05D003511 ORTHO05D004403 3.8e-18 94.7 72 59.7
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 6.4e-18 94.0 72 61.1
TAR381G0463 Trochodendron aralioides HOM05D003511 ORTHO05D004403 6.4e-18 94.0 72 62.5
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.1e-17 93.2 72 55.6
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.1e-17 93.2 72 55.6
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 1.1e-17 93.2 72 55.6
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 1.4e-17 92.8 69 59.4
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 2.4e-17 92.0 72 55.6
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 3.2e-17 91.7 72 56.9
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 3.2e-17 91.7 69 58.0
RcHm_v2.0_Chr6g0254581 Rosa chinensis HOM05D003511 ORTHO05D004403 3.2e-17 91.7 72 59.7
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 4.2e-17 91.3 72 58.3
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 4.2e-17 91.3 68 60.3
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.2e-17 91.3 72 58.3
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 4.2e-17 91.3 69 58.0
CSS0009203 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 5.4e-17 90.9 69 62.3
CSS0016029 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 5.4e-17 90.9 69 62.3
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 5.4e-17 90.9 72 59.7
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 5.4e-17 90.9 72 58.3
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 5.4e-17 90.9 72 59.7
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 5.4e-17 90.9 72 58.3
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 9.2e-17 90.1 72 61.1
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 1.2e-16 89.7 70 58.6
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 1.6e-16 89.4 72 55.6
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 1.6e-16 89.4 72 55.6
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.6e-16 89.4 72 58.3
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 2.1e-16 89.0 72 52.8
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 2.1e-16 89.0 71 60.6
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 2.7e-16 88.6 73 56.2
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 4.6e-16 87.8 72 55.6
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 4.6e-16 87.8 60 68.3
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.0e-15 86.7 72 56.9
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 1.3e-15 86.3 71 62.0
CSS0034894 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 2.3e-15 85.5 74 56.8
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 2.3e-15 85.5 72 52.8
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 2.3e-15 85.5 73 52.1
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 2.3e-15 85.5 72 54.2
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 2.3e-15 85.5 73 56.2
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 3.0e-15 85.1 72 51.4
vmacro02524 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 3.0e-15 85.1 72 54.2
DCAR_029092 Daucus carota HOM05D003511 ORTHO05D004403 3.9e-15 84.7 69 53.6
Potri.001G298900 Populus trichocarpa HOM05D003511 ORTHO05D004403 3.9e-15 84.7 72 51.4
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 5.1e-15 84.3 73 52.1
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 5.1e-15 84.3 70 54.3
CDE06G2550 Ceratophyllum demersum HOM05D003511 ORTHO05D004403 6.6e-15 84.0 69 60.9
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 6.6e-15 84.0 69 55.1
Cc02_g19400 Coffea canephora HOM05D003511 ORTHO05D004403 8.7e-15 83.6 74 54.1
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 1.1e-14 83.2 72 58.3
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 1.1e-14 83.2 62 56.5
MELO3C019553.2 Cucumis melo HOM05D003511 ORTHO05D004403 1.1e-14 83.2 62 56.5
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 1.1e-14 83.2 62 56.5
THA.LOC104819550 Tarenaya hassleriana HOM05D003511 ORTHO05D004403 1.1e-14 83.2 65 55.4
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 1.5e-14 82.8 60 63.3
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 1.5e-14 82.8 72 50.0
MBI16_g16349_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 1.9e-14 82.4 74 54.1
MBI16_g33969_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 1.9e-14 82.4 74 54.1
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 1.9e-14 82.4 72 51.4
Duzib248G0534 Durio zibethinus HOM05D003511 ORTHO05D004403 2.5e-14 82.0 70 55.7
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 4.3e-14 81.3 72 50.0
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 5.6e-14 80.9 74 50.0
Medtr4g127370 Medicago truncatula HOM05D003511 ORTHO05D004403 7.3e-14 80.5 72 50.0
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 9.6e-14 80.1 70 55.7
Rhsim10G0162400 Rhododendron simsii HOM05D003511 ORTHO05D004403 9.6e-14 80.1 72 50.0
Gohir.A12G021350 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.6e-13 79.3 69 55.1
Gohir.D12G021700 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.6e-13 79.3 69 55.1
Gorai.008G022000 Gossypium raimondii HOM05D003511 ORTHO05D004403 2.1e-13 79.0 69 55.1
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 2.1e-13 79.0 48 68.8
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 2.1e-13 79.0 75 48.0
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 2.1e-13 79.0 70 52.9
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 2.1e-13 79.0 71 56.3
Psat6g217200 Pisum sativum HOM05D003511 ORTHO05D004403 8.1e-13 77.0 75 48.0
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 1.1e-12 76.6 72 54.2
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 1.4e-12 76.3 61 57.4
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 2.4e-12 75.5 68 48.5
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 2.4e-12 75.5 63 50.8
TPR.G19061 Trifolium pratense HOM05D003511 ORTHO05D004403 5.3e-12 74.3 68 52.9
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 9.0e-12 73.6 42 73.8
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 9.0e-12 73.6 69 49.3
Manes.07G068400 Manihot esculenta HOM05D003511 ORTHO05D004403 1.2e-11 73.2 72 50.0
Sed0023024 Sechium edule HOM05D003511 ORTHO05D004403 1.2e-11 73.2 52 61.5
Carub.0007s0611 Capsella rubella HOM05D003511 ORTHO05D004403 2.0e-11 72.4 42 69.0
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 2.6e-11 72.0 71 49.3
AL7G17030 Arabidopsis lyrata HOM05D003511 ORTHO05D004403 3.4e-11 71.6 67 52.2
Ciclev10027838m.g Citrus clementina HOM05D003511 ORTHO05D004403 3.4e-11 71.6 52 57.7
Thhalv10024398m.g Eutrema salsugineum HOM05D003511 ORTHO05D004403 4.4e-11 71.2 65 50.8
PGR142G0041 Punica granatum HOM05D003511 ORTHO05D004403 4.4e-11 71.2 46 67.4
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 4.4e-11 71.2 65 53.8
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 5.8e-11 70.9 44 63.6
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 7.6e-11 70.5 42 71.4
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 7.6e-11 70.5 71 46.5
BcaNung04164 Brassica carinata HOM05D003511 ORTHO05D004403 9.9e-11 70.1 40 70.0
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 9.9e-11 70.1 46 67.4
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 9.9e-11 70.1 71 49.3
Sp7g32040 Schrenkiella parvula HOM05D003511 ORTHO05D004403 1.3e-10 69.7 70 48.6
CARHR242530 Cardamine hirsuta HOM05D003511 ORTHO05D004403 1.7e-10 69.3 40 70.0
ECA234G0109 Erigeron canadensis HOM05D003511 ORTHO05D004403 1.7e-10 69.3 47 61.7
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 2.2e-10 68.9 40 70.0
Glyma.10G260750 Glycine max HOM05D003511 ORTHO05D004403 2.2e-10 68.9 66 48.5
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 2.2e-10 68.9 65 50.8
AUR62010329 Chenopodium quinoa HOM05D003511 ORTHO05D004403 2.9e-10 68.6 70 42.9
AUR62039057 Chenopodium quinoa HOM05D003511 ORTHO05D004403 2.9e-10 68.6 69 43.5
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 2.9e-10 68.6 71 46.5
QL11p032687 Quercus lobata HOM05D003511 ORTHO05D004403 2.9e-10 68.6 40 72.5
SEGI_03881 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 2.9e-10 68.6 76 46.1
Lj5A215G58 Lonicera japonica HOM05D003511 ORTHO05D004403 3.8e-10 68.2 50 56.0
AT4G34260 Arabidopsis thaliana HOM05D003511 ORTHO05D004403 4.9e-10 67.8 40 67.5
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 4.9e-10 67.8 65 49.2
BcaNung04986 Brassica carinata HOM05D003511 ORTHO05D004403 4.9e-10 67.8 40 67.5
A01p04170 Brassica napus HOM05D003511 ORTHO05D004403 4.9e-10 67.8 40 67.5
C01p04540 Brassica napus HOM05D003511 ORTHO05D004403 4.9e-10 67.8 40 67.5
BolC1t00439H Brassica oleracea HOM05D003511 ORTHO05D004403 4.9e-10 67.8 40 67.5
BraA01t00406Z Brassica rapa HOM05D003511 ORTHO05D004403 4.9e-10 67.8 40 67.5
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 4.9e-10 67.8 44 65.9
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 4.9e-10 67.8 69 46.4
Aa31LG2G16810 Aethionema arabicum HOM05D003511 ORTHO05D004403 8.4e-10 67.0 49 57.1
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 1.1e-09 66.6 70 47.1
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 2.4e-09 65.5 70 42.9
Ah.01g010970 Amaranthus hybridus HOM05D003511 ORTHO05D004403 3.2e-09 65.1 72 38.9
Os10g0339290 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 4.2e-09 64.7 71 47.9
Hund06308 Selenicereus undatus HOM05D003511 ORTHO05D004403 5.4e-09 64.3 49 57.1
SEGI_08198 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 5.4e-09 64.3 69 46.4
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 1.6e-08 62.8 49 57.1
Hund00157 Selenicereus undatus HOM05D003511 ORTHO05D004403 2.7e-08 62.0 58 48.3
Medtr1g107145 Medicago truncatula HOM05D003511 ORTHO05D004403 3.5e-08 61.6 48 58.3
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 4.6e-08 61.2 84 39.3
Zm00001eb027590 Zea mays HOM05D003511 ORTHO05D004403 4.6e-08 61.2 74 45.9
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 7.8e-08 60.5 32 78.1
VMungo1215G0806 Vigna mungo HOM05D003511 ORTHO05D004403 1.0e-07 60.1 49 59.2
arahy.Tifrunner.gnm1.ann1.LFSR1E Arachis hypogaea HOM05D003511 ORTHO05D004403 1.3e-07 59.7 62 48.4
Lsat_1_v5_gn_5_116360 Lactuca sativa HOM05D003511 ORTHO05D004403 2.3e-07 58.9 51 52.9
Os10g0339600 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 3.9e-07 58.2 69 39.1
Phvul.002G053000 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 3.3e-06 55.1 41 63.4


User provided reference genes

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