Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1732.2 870 100.0
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1572.0 869 89.3
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1549.3 869 87.6
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1545.0 869 87.6
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1541.9 869 87.0
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1541.2 869 86.8
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1536.9 869 86.4
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1536.2 869 87.5
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1535.4 869 86.3
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1532.7 869 86.1
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1530.0 869 86.0
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1526.1 869 86.4
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1525.0 869 85.7
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1524.6 883 85.3
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1521.9 869 85.5
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1521.5 869 86.2
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1520.4 869 85.4
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1516.5 869 85.4
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1514.6 869 85.3
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1513.8 869 86.0
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1513.8 869 85.5
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1511.5 869 85.6
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1511.1 869 85.2
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1509.6 869 84.7
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1509.2 869 84.8
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1508.8 887 84.4
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1506.5 869 85.4
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1505.7 869 84.6
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1504.6 869 84.5
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1503.8 869 85.0
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1503.0 869 85.2
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1503.0 869 84.6
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1501.9 869 84.8
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1500.0 869 84.7
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1498.4 891 82.7
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1498.0 869 84.3
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1497.6 869 84.5
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1493.8 869 85.0
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1491.9 869 83.9
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1490.3 883 83.2
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1488.4 870 83.2
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1488.0 869 83.8
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1486.5 869 83.5
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1486.5 869 83.2
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1486.1 870 83.8
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1485.7 869 83.4
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1483.8 869 83.7
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1483.4 869 83.0
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1483.0 869 83.3
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1482.2 870 82.8
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1481.5 869 83.1
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1481.1 917 80.4
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1480.7 869 83.2
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1479.5 869 83.5
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1478.4 870 82.8
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1475.3 906 80.2
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1475.3 863 85.2
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1472.6 869 83.9
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1472.2 906 80.8
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1468.0 892 81.8
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1464.9 864 82.9
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1463.0 869 82.6
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1461.0 968 76.0
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1458.4 869 80.7
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1457.6 869 81.7
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1443.7 869 81.5
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1437.9 869 80.0
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1436.8 869 79.6
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1434.1 869 80.0
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1433.3 863 81.2
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1432.5 869 81.0
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1431.4 869 79.7
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1430.6 869 79.3
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1430.2 869 79.6
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1429.8 871 79.4
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1429.5 869 80.2
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1426.8 869 80.1
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1426.4 869 79.1
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1423.3 884 78.5
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1422.9 869 80.7
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1422.1 869 79.4
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1421.8 867 79.5
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1421.4 869 79.3
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1421.0 869 78.9
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1421.0 869 79.4
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1419.8 869 79.4
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1419.8 869 79.2
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1418.7 869 78.9
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1417.9 869 79.2
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1417.5 869 79.2
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1416.0 869 79.2
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1414.8 875 78.7
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1414.4 869 79.2
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1414.4 874 78.8
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1411.4 884 77.8
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1410.6 869 79.2
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1407.9 874 78.4
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1407.1 869 79.2
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1399.0 984 73.0
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1399.0 955 74.9
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1394.4 934 73.9
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1392.1 869 79.3
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1389.8 875 77.8
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1384.4 895 76.4
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1374.4 868 77.5
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1368.6 801 83.1
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1357.0 863 77.4
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1355.1 891 74.9
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1354.0 898 74.6
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1335.9 869 77.4
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1301.2 899 73.4
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1286.9 797 79.2
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1270.8 869 70.3
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1233.8 869 67.4
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1223.8 748 81.3
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1218.4 879 67.1
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1159.8 722 79.4
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1143.3 889 67.8
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1142.5 889 67.8
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1126.7 826 66.6
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1108.2 739 75.4
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1088.6 871 63.9
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 2.4e-287 992.3 868 59.4
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 5.4e-287 991.1 620 77.7
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.0e-277 960.3 596 82.2
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 6.6e-277 957.6 894 53.6
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 1.9e-276 956.1 535 86.2
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 2.4e-271 939.1 862 53.2
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 5.6e-268 927.9 876 53.4
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.6e-267 926.4 774 59.0
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 5.8e-225 785.0 743 58.1
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 1.8e-221 773.5 740 56.8
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.1e-218 764.2 676 60.2
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.7e-216 756.9 671 56.3
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 2.8e-211 739.6 861 44.1
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.6e-198 697.2 466 72.3
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 6.3e-187 658.7 532 66.9
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 9.7e-180 634.8 413 77.0
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 2.5e-167 593.6 347 86.2
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 7.8e-161 572.0 393 70.0
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 2.6e-156 557.0 405 68.6
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 1.2e-137 495.0 393 65.9
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 9.9e-132 475.3 251 89.2
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 2.9e-131 473.8 309 73.8
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 7.1e-130 469.2 329 69.3
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 1.6e-105 388.3 211 84.4
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 3.9e-104 383.6 227 83.7
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.5e-103 381.7 264 71.6
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.3e-99 368.6 292 65.1
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.8e-86 323.6 881 29.1
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 5.3e-85 320.1 860 28.8
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.9e-82 311.6 865 28.9
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 2.9e-67 261.2 853 26.5
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 1.2e-57 229.2 195 59.5
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.2e-57 229.2 222 54.1
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 2.7e-57 228.0 873 23.4
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 6.8e-56 223.4 332 38.0
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 1.5e-50 205.7 310 43.5
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 2.2e-46 191.8 163 62.0
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 4.9e-46 190.7 124 79.0
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 6.3e-46 190.3 220 53.2
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.0e-44 185.3 96 85.4
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 9.8e-39 166.4 461 28.2
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 3.7e-38 164.5 134 63.4
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 7.8e-36 156.8 149 55.7
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 6.2e-33 147.1 71 94.4
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 3.5e-28 131.3 423 26.7
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 2.1e-25 122.1 111 55.0
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 2.9e-22 111.7 294 25.5
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 3.2e-21 108.2 137 42.3
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.1e-17 95.5 83 63.9
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 2.6e-15 88.6 61 62.3
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 2.7e-12 78.6 56 64.3
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.3e-11 76.3 48 70.8
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 6.6e-11 73.9 45 77.8
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.4e-08 66.2 36 86.1
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 4.4e-07 61.2 77 44.2


User provided reference genes

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