Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 9.2e-78 293.5 150 100.0
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 4.9e-55 218.0 157 76.4
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 1.2e-50 203.4 153 74.5
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 1.2e-45 186.8 151 67.5
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 3.5e-45 185.3 153 68.6
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 4.6e-45 184.9 150 70.0
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 1.9e-43 179.5 151 68.9
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 1.9e-43 179.5 151 68.9
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 4.3e-43 178.3 154 67.5
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 5.6e-43 177.9 153 66.7
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.3e-42 176.8 149 67.8
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 1.3e-42 176.8 156 64.7
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 2.8e-42 175.6 151 67.5
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 2.4e-41 172.6 157 63.7
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 3.1e-41 172.2 152 65.8
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 5.3e-41 171.4 151 65.6
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 5.3e-41 171.4 156 64.7
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 5.3e-41 171.4 151 66.2
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 5.3e-41 171.4 151 66.2
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 7.6e-40 167.5 155 60.6
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 9.9e-40 167.2 151 66.9
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 2.9e-39 165.6 153 64.7
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 2.9e-39 165.6 150 66.0
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 4.9e-39 164.9 151 66.2
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 6.0e-37 157.9 159 56.0
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.0e-36 157.1 140 65.7
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 1.3e-34 150.2 153 60.1
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 3.7e-34 148.7 159 57.2
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 6.2e-34 147.9 153 54.9
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 2.4e-33 146.0 162 58.0
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.4e-33 146.0 157 56.7
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.4e-33 146.0 157 56.7
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 3.1e-33 145.6 159 54.7
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 3.1e-33 145.6 159 55.3
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 9.0e-33 144.1 164 53.7
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 2.0e-32 142.9 160 51.9
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 2.0e-32 142.9 159 54.1
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 3.4e-32 142.1 159 53.5
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 7.6e-32 141.0 162 56.8
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 1.7e-31 139.8 162 56.2
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 1.7e-31 139.8 162 54.3
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 2.9e-31 139.0 162 54.9
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 2.9e-31 139.0 166 51.8
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.8e-31 138.7 151 56.3
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 1.4e-30 136.7 166 51.8
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 2.4e-30 136.0 166 53.6
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 7.1e-30 134.4 151 53.6
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 1.6e-29 133.3 161 54.0
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 4.6e-29 131.7 171 53.8
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 7.9e-29 131.0 150 56.7
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 7.9e-29 131.0 161 49.7
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 1.0e-28 130.6 162 55.6
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 3.0e-28 129.0 157 53.5
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 3.9e-28 128.6 163 54.0
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 6.7e-28 127.9 152 53.3
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 8.7e-28 127.5 159 53.5
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 4.3e-27 125.2 167 50.3
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 5.6e-27 124.8 157 50.3
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 5.6e-27 124.8 161 50.9
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 7.4e-27 124.4 157 51.6
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 9.6e-27 124.0 151 54.3
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.3e-26 123.6 157 50.3
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.6e-26 123.2 163 50.9
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 1.6e-26 123.2 161 52.8
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 3.7e-26 122.1 159 48.4
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 8.2e-26 120.9 159 49.7
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 1.1e-25 120.6 157 51.0
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 1.4e-25 120.2 156 55.1
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 1.8e-25 119.8 163 49.7
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 4.0e-25 118.6 155 49.0
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 5.3e-25 118.2 157 50.3
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 6.9e-25 117.9 164 51.2
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 6.9e-25 117.9 151 49.7
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 2.0e-24 116.3 153 50.3
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 2.0e-24 116.3 163 48.5
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 2.6e-24 115.9 161 49.1
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 3.4e-24 115.5 156 52.6
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 7.6e-24 114.4 161 48.4
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 1.0e-23 114.0 158 48.7
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 2.2e-23 112.8 163 47.9
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 2.2e-23 112.8 163 50.3
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 2.9e-23 112.5 155 49.0
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 3.8e-23 112.1 153 46.4
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 3.8e-23 112.1 153 46.4
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 3.8e-23 112.1 168 46.4
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 1.1e-22 110.5 140 50.7
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 1.1e-22 110.5 164 52.4
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 1.9e-22 109.8 159 45.9
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 1.9e-22 109.8 158 46.2
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 2.5e-22 109.4 150 46.7
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 4.2e-22 108.6 140 49.3
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 4.2e-22 108.6 155 48.4
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 4.2e-22 108.6 159 45.9
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 7.1e-22 107.8 154 47.4
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 9.3e-22 107.5 156 46.2
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 9.3e-22 107.5 156 46.2
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 1.2e-21 107.1 133 54.1
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 2.1e-21 106.3 155 44.5
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 2.7e-21 105.9 133 51.1
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 3.5e-21 105.5 98 58.2
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 4.6e-21 105.1 153 46.4
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 4.6e-21 105.1 153 46.4
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 6.0e-21 104.8 151 49.7
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 2.3e-20 102.8 156 45.5
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 2.3e-20 102.8 156 45.5
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 2.3e-20 102.8 156 45.5
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 2.3e-20 102.8 79 63.3
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 8.7e-20 100.9 151 48.3
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 8.7e-20 100.9 156 42.9
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 8.7e-20 100.9 98 56.1
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 1.1e-19 100.5 89 58.4
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 1.1e-19 100.5 161 46.6
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 1.5e-19 100.1 151 48.3
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 1.9e-19 99.8 89 59.6
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 1.9e-19 99.8 151 49.0
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 1.9e-19 99.8 151 49.0
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 1.9e-19 99.8 128 44.5
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 1.9e-19 99.8 165 46.7
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 4.3e-19 98.6 156 43.6
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.7e-19 98.2 86 59.3
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 1.6e-18 96.7 149 45.0
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 2.2e-18 96.3 56 76.8
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.8e-17 93.2 94 54.3
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 2.4e-17 92.8 87 56.3
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 4.5e-16 88.6 160 43.1
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.7e-15 86.7 54 72.2
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 5.5e-14 81.6 79 49.4
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 7.9e-13 77.8 55 60.0
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.0e-12 75.9 65 58.5
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 9.7e-11 70.9 87 46.0
CAN.G241.30 Capsicum annuum HOM05D003855 ORTHO05D115394 6.3e-10 68.2 148 35.1
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 3.1e-09 65.9 71 46.5
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 5.9e-08 61.6 103 38.8
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 5.5e-06 55.1 150 37.3


User provided reference genes

Program Settings