Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 4.3e-127 458.0 227 100.0
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 3.7e-115 418.3 228 91.7
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 3.0e-88 328.9 178 94.4
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 7.1e-82 307.8 254 66.5
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 7.9e-81 304.3 249 67.5
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 2.3e-80 302.8 254 65.0
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 7.4e-79 297.7 254 65.4
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 4.8e-70 268.5 236 64.4
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 2.4e-53 213.0 110 96.4
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 9.1e-53 211.1 109 95.4
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 1.2e-44 184.1 240 47.5
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 1.2e-44 184.1 241 47.3
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 5.9e-44 181.8 239 46.4
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 7.7e-44 181.4 237 48.1
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 5.0e-43 178.7 241 46.5
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 8.5e-43 177.9 240 45.8
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 8.5e-43 177.9 242 45.9
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 1.5e-42 177.2 241 46.5
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 1.9e-42 176.8 241 44.4
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 5.5e-42 175.3 240 42.9
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 1.6e-41 173.7 243 45.7
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 8.0e-41 171.4 250 43.6
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 8.8e-40 167.9 238 45.0
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 1.3e-38 164.1 242 41.3
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 2.8e-38 162.9 239 43.5
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 2.8e-38 162.9 241 42.7
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 2.8e-38 162.9 243 46.5
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 3.7e-38 162.5 242 44.6
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 6.3e-38 161.8 241 43.6
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 1.8e-37 160.2 250 42.4
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 2.4e-37 159.8 234 41.0
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 3.1e-37 159.5 237 40.1
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 3.1e-37 159.5 242 42.1
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 9.1e-37 157.9 244 41.8
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 1.2e-36 157.5 246 42.7
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 1.6e-36 157.1 241 43.2
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.6e-36 156.4 241 42.3
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 1.0e-35 154.5 240 43.8
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 1.7e-35 153.7 238 41.6
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 2.9e-35 152.9 242 40.1
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 3.8e-35 152.5 237 40.9
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 5.0e-35 152.1 243 40.3
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 5.0e-35 152.1 242 41.3
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 5.0e-35 152.1 241 43.2
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 8.5e-35 151.4 218 44.5
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 1.5e-34 150.6 242 42.1
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 2.5e-34 149.8 241 36.5
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 4.2e-34 149.1 238 43.3
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 5.5e-34 148.7 237 42.6
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 7.2e-34 148.3 242 40.5
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 7.2e-34 148.3 240 38.8
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 1.6e-33 147.1 242 41.3
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 1.6e-33 147.1 247 42.9
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 2.1e-33 146.7 238 38.7
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 2.7e-33 146.4 241 39.4
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 2.7e-33 146.4 252 38.1
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 3.6e-33 146.0 238 42.4
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 3.6e-33 146.0 242 39.7
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 3.6e-33 146.0 242 41.7
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 3.6e-33 146.0 239 37.7
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 4.7e-33 145.6 254 38.6
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 4.7e-33 145.6 257 38.1
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 6.1e-33 145.2 241 39.4
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 1.0e-32 144.4 241 39.0
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 1.0e-32 144.4 241 41.1
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 1.4e-32 144.1 241 40.2
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 1.4e-32 144.1 243 40.3
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.4e-32 144.1 238 42.0
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 3.0e-32 142.9 246 40.7
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 5.2e-32 142.1 240 38.8
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 6.8e-32 141.7 237 38.0
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 6.8e-32 141.7 233 40.3
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 6.8e-32 141.7 236 36.9
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 8.8e-32 141.4 239 42.7
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.5e-31 140.6 233 39.9
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 3.4e-31 139.4 240 40.0
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 4.4e-31 139.0 239 37.7
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 9.8e-31 137.9 240 39.2
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 9.8e-31 137.9 240 37.9
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.7e-30 137.1 240 40.0
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 2.2e-30 136.7 244 37.3
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 1.1e-29 134.4 240 36.2
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 4.1e-29 132.5 239 36.8
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 4.1e-29 132.5 239 36.8
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 5.4e-29 132.1 113 61.9
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 7.0e-29 131.7 241 37.3
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 1.2e-28 131.0 240 37.9
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 2.7e-28 129.8 238 35.3
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 2.7e-28 129.8 243 35.4
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 3.5e-28 129.4 242 36.4
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 4.5e-28 129.0 239 37.2
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 4.5e-28 129.0 241 34.4
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 1.0e-27 127.9 242 35.1
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.3e-27 127.5 128 52.3
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 1.7e-27 127.1 242 35.1
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 1.7e-27 127.1 246 35.4
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 8.5e-27 124.8 243 37.4
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 2.5e-26 123.2 241 35.3
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 2.7e-25 119.8 165 44.8
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 6.1e-25 118.6 128 48.4
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 9.8e-23 111.3 120 50.8
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 9.8e-23 111.3 226 35.4
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 4.9e-22 109.0 237 34.2
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 4.9e-22 109.0 202 39.1
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 1.1e-21 107.8 239 31.4
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 7.0e-21 105.1 132 45.5
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 3.6e-17 92.8 95 49.5
Lj5P10G10 Lonicera japonica HOM05D066447 ORTHO05D235084 4.0e-16 89.4 51 90.2
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 4.0e-16 89.4 177 32.2
Lj5P18G33 Lonicera japonica HOM05D066447 ORTHO05D233919 1.2e-15 87.8 51 88.2
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 1.7e-14 84.0 195 31.3
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 1.7e-14 84.0 107 46.7
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 3.7e-14 82.8 129 37.2
CSS0021359 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 2.4e-13 80.1 157 39.5
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 5.4e-13 79.0 79 49.4
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 3.0e-11 73.2 197 27.4
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 2.8e-09 66.6 213 28.2
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 3.6e-09 66.2 193 28.5
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 6.2e-09 65.5 236 26.7
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 5.2e-08 62.4 84 38.1
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 8.9e-08 61.6 197 28.4


User provided reference genes

Program Settings