Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 4.3e-76 288.1 168 100.0
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 9.6e-76 287.0 168 99.4
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 9.6e-76 287.0 168 99.4
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 9.6e-76 287.0 168 99.4
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 9.6e-76 287.0 168 99.4
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 6.2e-75 284.3 168 98.2
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 6.2e-75 284.3 168 98.2
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 6.2e-75 284.3 168 98.2
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 6.2e-75 284.3 168 98.8
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 8.1e-75 283.9 168 98.2
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 8.1e-75 283.9 168 98.2
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 8.1e-75 283.9 168 98.2
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 8.1e-75 283.9 168 98.2
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 8.1e-75 283.9 168 98.2
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 8.1e-75 283.9 168 98.2
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 8.1e-75 283.9 168 98.2
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.1e-74 283.5 168 97.6
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.1e-74 283.5 168 97.6
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.1e-74 283.5 168 97.6
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 1.4e-74 283.1 168 97.6
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 1.4e-74 283.1 168 98.2
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 1.4e-74 283.1 168 98.2
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 1.4e-74 283.1 168 97.0
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 1.4e-74 283.1 168 97.0
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.4e-74 283.1 168 98.2
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.4e-74 283.1 168 98.2
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 1.4e-74 283.1 168 98.2
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 1.8e-74 282.7 168 97.6
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 1.8e-74 282.7 168 97.6
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 1.8e-74 282.7 168 98.2
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 1.8e-74 282.7 168 97.6
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 1.8e-74 282.7 168 97.6
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.8e-74 282.7 168 97.6
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.8e-74 282.7 168 97.6
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 2.4e-74 282.3 168 97.6
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 2.4e-74 282.3 168 97.0
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 2.4e-74 282.3 168 97.6
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 3.1e-74 282.0 168 97.6
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 3.1e-74 282.0 168 97.6
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 4.0e-74 281.6 168 97.0
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.0e-74 281.6 168 97.0
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 4.0e-74 281.6 168 97.0
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 4.0e-74 281.6 168 97.6
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 4.0e-74 281.6 168 97.6
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 5.3e-74 281.2 168 96.4
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 5.3e-74 281.2 168 97.0
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 5.3e-74 281.2 168 97.0
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 5.3e-74 281.2 168 97.0
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 5.3e-74 281.2 168 97.0
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 5.3e-74 281.2 168 97.6
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 5.3e-74 281.2 168 97.0
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 5.3e-74 281.2 168 97.0
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 6.9e-74 280.8 168 97.0
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 6.9e-74 280.8 168 97.0
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 6.9e-74 280.8 168 97.0
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 6.9e-74 280.8 168 97.0
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 6.9e-74 280.8 168 97.0
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 6.9e-74 280.8 168 97.0
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 6.9e-74 280.8 168 97.0
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 6.9e-74 280.8 168 97.0
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 6.9e-74 280.8 168 97.0
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 6.9e-74 280.8 168 97.6
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 6.9e-74 280.8 168 95.8
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 9.0e-74 280.4 168 96.4
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 9.0e-74 280.4 168 97.0
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 9.0e-74 280.4 168 97.0
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 9.0e-74 280.4 168 97.0
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 9.0e-74 280.4 168 97.0
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 9.0e-74 280.4 168 97.0
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.2e-73 280.0 168 97.0
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.2e-73 280.0 168 97.0
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.2e-73 280.0 168 97.0
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 1.2e-73 280.0 168 97.0
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 1.2e-73 280.0 168 97.0
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.2e-73 280.0 168 97.0
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.2e-73 280.0 168 97.0
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.5e-73 279.6 168 96.4
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.5e-73 279.6 168 96.4
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 1.5e-73 279.6 168 97.0
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 1.5e-73 279.6 168 97.0
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 1.5e-73 279.6 168 97.0
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.5e-73 279.6 168 97.0
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.0e-73 279.3 168 96.4
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 2.0e-73 279.3 167 97.0
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 2.0e-73 279.3 167 97.0
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 2.6e-73 278.9 168 96.4
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 2.6e-73 278.9 168 96.4
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 2.6e-73 278.9 168 96.4
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 2.6e-73 278.9 168 96.4
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.6e-73 278.9 168 96.4
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.6e-73 278.9 168 96.4
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 2.6e-73 278.9 168 97.0
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 3.4e-73 278.5 168 96.4
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 4.5e-73 278.1 168 95.8
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 4.5e-73 278.1 168 95.8
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 4.5e-73 278.1 167 95.8
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 5.8e-73 277.7 168 95.8
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 5.8e-73 277.7 168 95.8
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 5.8e-73 277.7 168 95.8
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 5.8e-73 277.7 168 95.8
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 5.8e-73 277.7 168 95.8
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 5.8e-73 277.7 168 95.8
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 5.8e-73 277.7 168 96.4
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 5.8e-73 277.7 168 95.8
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 7.6e-73 277.3 168 95.8
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 1.3e-72 276.6 168 95.2
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.8
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 1.3e-72 276.6 168 95.2
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.7e-72 276.2 168 95.2
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.7e-72 276.2 168 95.2
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 1.7e-72 276.2 168 95.8
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 2.2e-72 275.8 168 94.6
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 4.9e-72 274.6 168 94.6
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 4.9e-72 274.6 168 94.6
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 6.5e-72 274.2 168 94.6
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 1.2e-70 270.0 162 98.1
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 4.6e-70 268.1 167 92.8
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 4.6e-70 268.1 167 92.8
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 3.7e-67 258.5 166 90.4
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 1.8e-66 256.1 166 88.6
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 4.1e-66 255.0 164 90.9
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.2e-65 253.4 224 62.5
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 1.5e-65 253.1 168 90.5
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.6e-62 243.0 148 98.0
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 1.0e-61 240.4 148 93.2
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 3.0e-61 238.8 168 85.1
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 1.1e-58 230.3 168 80.4
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.1e-58 230.3 168 81.5
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 5.3e-58 228.0 158 77.2
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 2.0e-57 226.1 166 79.5
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 4.5e-57 224.9 137 97.8
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 5.9e-57 224.6 166 82.5
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 1.1e-55 220.3 136 97.1
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 5.5e-55 218.0 166 77.1
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 5.5e-55 218.0 136 95.6
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.6e-54 216.5 136 95.6
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 3.3e-52 208.8 168 69.0
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.7e-51 206.5 137 89.1
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 8.2e-51 204.1 132 95.5
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 4.1e-50 201.8 162 76.5
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 7.2e-47 191.0 98 91.8
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 9.7e-44 180.6 173 61.3
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 1.2e-38 163.7 81 93.8
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 8.8e-37 157.5 77 93.5
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 6.3e-35 151.4 77 89.6
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 1.6e-33 146.7 127 62.2
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.9e-31 139.8 104 70.2
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 2.0e-28 129.8 92 72.8
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 6.3e-19 98.2 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.1e-18 97.4 47 100.0
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.2e-17 94.0 168 39.9
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 2.7e-17 92.8 78 65.4
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.3e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.1e-07 60.8 60 53.3


User provided reference genes

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