Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 3.1e-207 724.9 376 100.0
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 2.4e-111 406.4 393 57.3
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 2.1e-110 403.3 388 57.2
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 2.1e-110 403.3 379 57.3
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 3.5e-110 402.5 388 57.5
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 6.0e-110 401.7 391 56.0
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 4.3e-108 395.6 394 55.3
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 7.3e-108 394.8 417 54.2
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 7.3e-108 394.8 379 56.5
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 9.6e-108 394.4 394 55.1
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 9.6e-108 394.4 388 57.5
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.3e-107 394.0 385 54.5
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 3.6e-107 392.5 389 56.6
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 4.8e-107 392.1 387 57.6
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 6.2e-107 391.7 384 55.7
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 1.1e-106 391.0 379 58.6
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 1.1e-106 391.0 396 55.6
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.4e-106 389.8 393 53.4
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 3.1e-106 389.4 388 54.4
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 3.1e-106 389.4 388 56.4
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 4.0e-106 389.0 392 54.8
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 9.0e-106 387.9 388 56.2
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 1.2e-105 387.5 388 53.9
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 1.2e-105 387.5 388 55.2
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.5e-105 387.1 396 54.8
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 2.0e-105 386.7 393 54.5
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 2.6e-105 386.3 378 55.6
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 4.4e-105 385.6 388 54.6
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 4.4e-105 385.6 378 55.0
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 7.6e-105 384.8 379 56.7
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 9.9e-105 384.4 379 55.9
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 1.3e-104 384.0 384 56.0
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 2.2e-104 383.3 391 54.5
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 4.9e-104 382.1 388 55.9
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 4.9e-104 382.1 391 54.2
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 4.9e-104 382.1 388 54.9
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 6.4e-104 381.7 379 56.2
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 2.4e-103 379.8 361 58.4
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.4e-103 379.8 381 56.2
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 7.1e-103 378.3 391 52.7
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 7.1e-103 378.3 388 54.1
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 9.3e-103 377.9 381 55.9
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 9.3e-103 377.9 381 55.9
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 1.2e-102 377.5 388 54.9
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 1.6e-102 377.1 379 54.4
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.6e-102 377.1 381 55.6
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 1.6e-102 377.1 388 53.6
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 4.6e-102 375.6 379 54.9
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 4.6e-102 375.6 395 54.4
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 4.6e-102 375.6 379 54.9
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 4.6e-102 375.6 386 53.4
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 6.0e-102 375.2 381 55.6
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.3e-101 374.0 361 57.3
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 1.3e-101 374.0 379 53.8
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 1.7e-101 373.6 375 54.9
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 3.0e-101 372.9 389 54.0
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 3.0e-101 372.9 384 53.1
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 3.9e-101 372.5 397 54.2
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 3.9e-101 372.5 379 53.6
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 5.1e-101 372.1 380 54.5
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 5.1e-101 372.1 379 53.6
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 6.6e-101 371.7 385 53.8
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 8.7e-101 371.3 395 54.2
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 1.9e-100 370.2 385 52.2
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 1.9e-100 370.2 388 52.3
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.5e-100 369.8 385 53.0
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 2.5e-100 369.8 385 52.7
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 3.3e-100 369.4 369 55.3
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 5.6e-100 368.6 385 53.2
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 9.6e-100 367.9 382 52.1
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 9.6e-100 367.9 382 54.2
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 9.6e-100 367.9 418 51.4
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 1.3e-99 367.5 388 53.4
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 2.8e-99 366.3 382 51.8
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 6.2e-99 365.2 384 52.1
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 6.2e-99 365.2 382 51.8
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 6.2e-99 365.2 378 54.2
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 8.1e-99 364.8 385 52.7
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.1e-98 364.4 383 53.0
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 1.4e-98 364.0 385 52.7
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 1.8e-98 363.6 385 52.7
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 9.0e-98 361.3 386 52.8
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 1.5e-97 360.5 395 51.6
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 2.6e-97 359.8 383 50.9
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 3.4e-97 359.4 378 52.1
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 4.5e-97 359.0 385 51.7
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 2.2e-96 356.7 381 52.8
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 2.9e-96 356.3 379 52.2
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 1.6e-94 350.5 395 51.9
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 6.0e-94 348.6 395 51.6
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 6.0e-94 348.6 379 53.6
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 2.1e-91 340.1 396 49.2
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 6.9e-90 335.1 385 49.9
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 9.0e-90 334.7 380 49.7
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 8.4e-88 328.2 359 52.6
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 3.2e-87 326.2 358 52.5
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.1e-86 323.6 333 56.2
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 2.0e-81 307.0 390 44.4
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 2.2e-80 303.5 237 65.8
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 2.5e-79 300.1 255 60.4
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.6e-73 280.0 303 55.1
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 6.5e-72 275.4 226 62.4
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 2.1e-70 270.4 255 54.5
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.6e-70 269.6 310 52.6
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 7.9e-70 268.5 297 53.5
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 8.2e-67 258.5 307 51.8
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 1.8e-58 230.7 189 61.9
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 5.3e-58 229.2 189 61.4
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 7.0e-58 228.8 203 61.1
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 8.5e-56 221.9 189 60.3
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.2e-54 218.0 399 38.3
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 6.1e-54 215.7 265 49.8
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 1.0e-53 214.9 189 58.7
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 2.3e-53 213.8 413 32.2
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 7.5e-52 208.8 391 33.2
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 1.3e-51 208.0 387 32.3
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 3.7e-51 206.5 190 57.4
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 2.4e-50 203.8 190 55.8
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 3.5e-49 199.9 190 55.3
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 7.2e-47 192.2 385 33.0
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 4.5e-33 146.4 140 59.3
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 6.8e-29 132.5 164 47.0
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 3.2e-26 123.6 390 27.9
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 5.0e-24 116.3 397 26.7
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 5.2e-21 106.3 359 23.1
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 2.6e-20 104.0 81 61.7
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.7e-19 101.3 182 34.6
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 1.2e-17 95.1 85 58.8
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 4.6e-17 93.2 79 58.2
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 7.8e-17 92.4 94 54.3
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 1.9e-15 87.8 104 47.1
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.1e-14 84.3 385 22.9
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 3.6e-14 83.6 361 23.8
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 3.6e-14 83.6 354 25.1
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 3.2e-10 70.5 259 23.2
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 2.1e-09 67.8 359 23.1
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 6.2e-06 56.2 44 63.6


User provided reference genes

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