Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 1.3e-255 885.9 453 100.0
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 1.8e-164 583.2 454 67.4
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 8.4e-159 564.3 452 64.8
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 8.4e-159 564.3 452 64.8
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 2.9e-151 539.3 453 61.6
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 6.5e-151 538.1 452 61.3
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 6.0e-149 531.6 454 61.0
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 2.5e-147 526.2 423 64.8
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 2.2e-146 523.1 419 63.7
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 1.3e-143 513.8 443 60.7
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 1.9e-142 510.0 429 59.9
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 3.2e-142 509.2 436 61.2
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 7.9e-141 504.6 438 59.4
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 7.9e-141 504.6 435 60.7
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 6.7e-140 501.5 441 58.0
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 1.1e-139 500.7 431 58.9
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 2.2e-138 496.5 454 57.7
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 4.8e-138 495.4 457 56.5
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 7.7e-136 488.0 455 55.8
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 2.9e-135 486.1 454 56.6
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 4.7e-133 478.8 426 55.9
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 1.0e-132 477.6 429 56.4
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.0e-132 477.6 429 56.2
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.5e-131 473.8 452 54.6
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 2.0e-131 473.4 452 54.9
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 7.4e-131 471.5 456 54.6
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 1.3e-130 470.7 461 54.9
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 2.2e-130 469.9 431 58.0
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 2.8e-130 469.5 429 56.4
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 4.8e-130 468.8 454 56.2
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 4.8e-130 468.8 429 56.2
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 4.8e-130 468.8 449 54.3
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 6.3e-130 468.4 426 56.3
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 4.1e-129 465.7 416 55.8
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 5.3e-129 465.3 416 56.0
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 1.5e-128 463.8 423 55.8
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 2.0e-128 463.4 416 56.5
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 2.0e-128 463.4 431 55.0
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 7.7e-128 461.5 416 56.7
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 2.2e-127 459.9 416 55.8
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 2.2e-127 459.9 416 55.8
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 2.9e-127 459.5 460 53.7
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 8.5e-127 458.0 435 54.0
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 1.1e-126 457.6 416 56.2
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 1.1e-126 457.6 416 56.2
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 1.6e-125 453.8 417 55.9
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 2.1e-125 453.4 428 55.4
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 4.7e-125 452.2 416 55.3
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 8.0e-125 451.4 454 54.0
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 1.4e-124 450.7 447 53.2
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 8.8e-124 448.0 419 54.7
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 1.7e-122 443.7 427 55.0
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 2.8e-122 443.0 420 56.0
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 1.1e-121 441.0 450 53.3
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 1.1e-121 441.0 428 54.4
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.8e-121 440.3 450 52.9
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 1.2e-120 437.6 425 54.4
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 1.3e-119 434.1 451 53.7
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 1.1e-118 431.0 446 52.9
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 7.2e-118 428.3 430 53.0
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 3.6e-117 426.0 418 54.3
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 3.6e-117 426.0 424 52.4
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 4.7e-117 425.6 418 54.3
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 4.7e-117 425.6 437 51.5
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 2.3e-116 423.3 446 51.1
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 1.1e-110 404.4 417 48.9
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 1.2e-109 401.0 453 49.7
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 3.6e-109 399.4 454 48.9
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 6.1e-109 398.7 353 56.7
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 2.3e-108 396.7 416 51.0
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 5.2e-108 395.6 430 50.7
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 2.0e-107 393.7 444 49.5
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 6.3e-106 388.7 427 48.7
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 8.3e-106 388.3 420 51.0
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 3.1e-105 386.3 451 48.8
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 3.1e-105 386.3 451 49.2
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 7.0e-105 385.2 451 48.6
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 4.5e-104 382.5 416 48.8
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 5.9e-104 382.1 416 49.3
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 1.0e-103 381.3 452 48.7
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 1.7e-103 380.6 451 46.6
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 3.0e-100 369.8 421 49.9
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 9.8e-99 364.8 417 48.2
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 2.8e-98 363.2 420 47.1
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 5.4e-97 359.0 351 53.0
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 5.6e-94 349.0 356 53.9
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 9.5e-94 348.2 425 47.8
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 4.7e-93 345.9 458 44.3
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 1.5e-91 340.9 299 60.2
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 1.4e-89 334.3 395 46.1
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 8.0e-85 318.5 455 40.7
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 2.2e-82 310.5 452 42.9
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 7.1e-73 278.9 219 61.6
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 3.0e-71 273.5 299 48.5
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 1.8e-68 264.2 246 53.7
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 1.3e-66 258.1 420 38.3
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 2.7e-64 250.4 421 38.7
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 3.0e-63 246.9 217 57.6
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 5.3e-60 236.1 185 62.7
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 1.9e-54 217.6 424 35.6
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 6.9e-44 182.6 178 49.4
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 1.3e-34 151.8 168 46.4
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 4.9e-34 149.8 171 46.8
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 2.3e-31 141.0 428 25.9
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 6.7e-31 139.4 215 41.4
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 3.1e-28 130.6 170 42.4
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.7e-26 124.8 146 44.5
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 1.0e-23 115.5 225 32.9
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 6.7e-23 112.8 139 43.2
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 1.8e-20 104.8 124 41.1
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 1.8e-20 104.8 124 41.1
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 4.5e-19 100.1 144 40.3
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.3e-18 98.6 137 45.3
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 8.5e-18 95.9 115 40.0
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 4.2e-17 93.6 126 42.1
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 6.1e-16 89.7 119 47.1
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 3.9e-15 87.0 114 39.5
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 1.2e-11 75.5 99 37.4
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 1.7e-10 71.6 105 39.0
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.8e-10 70.5 91 39.6
arahy.Tifrunner.gnm1.ann1.QPA1DX Arachis hypogaea HOM05D006294 ORTHO05D007668 5.0e-10 70.1 173 31.2
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 6.5e-10 69.7 131 31.3
PRCOL_00003068 Prasinoderma coloniale HOM05D004127 ORTHO05D005119 7.2e-09 66.2 92 34.8
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 9.4e-09 65.9 91 33.0
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 1.6e-08 65.1 212 25.0
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 2.7e-08 64.3 91 35.2
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 4.7e-08 63.5 94 38.3
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 1.0e-07 62.4 93 36.6
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 1.4e-07 62.0 94 34.0
Mapoly0036s0086 Marchantia polymorpha HOM05D004127 ORTHO05D005119 1.4e-07 62.0 91 34.1
Medtr7g017525 Medicago truncatula HOM05D004127 ORTHO05D005119 1.8e-07 61.6 99 35.4
Medtr7g017530 Medicago truncatula HOM05D004127 ORTHO05D005119 1.8e-07 61.6 99 35.4
Lj2C1208T0 Lonicera japonica HOM05D004127 ORTHO05D005119 2.3e-07 61.2 91 34.1
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 3.0e-07 60.8 91 36.3
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 3.0e-07 60.8 91 35.2
Mapoly0089s0054 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.9e-07 60.5 250 24.0
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 3.9e-07 60.5 91 34.1
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 3.9e-07 60.5 91 31.9
Aqoxy2G02720 Aquilegia oxysepala HOM05D004127 ORTHO05D005119 5.2e-07 60.1 91 29.7
AT3G53170 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 5.2e-07 60.1 198 21.7
MSTRG.21699 Avicennia marina HOM05D004127 ORTHO05D005119 5.2e-07 60.1 91 33.0
Cc01_g21590 Coffea canephora HOM05D004127 ORTHO05D005119 5.2e-07 60.1 91 34.1
DCAR_012332 Daucus carota HOM05D004127 ORTHO05D005119 5.2e-07 60.1 91 31.9
Dinv33130 Davidia involucrata HOM05D004127 ORTHO05D005119 8.8e-07 59.3 91 31.9
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 8.8e-07 59.3 91 31.9
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 8.8e-07 59.3 91 33.0
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 8.8e-07 59.3 91 31.9
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 8.8e-07 59.3 91 35.2
CSS0010117 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 1.1e-06 58.9 91 33.0
COL.COLO4_23210 Corchorus olitorius HOM05D004127 ORTHO05D005119 1.5e-06 58.5 91 34.1
Manes.05G014100 Manihot esculenta HOM05D004127 ORTHO05D005119 1.5e-06 58.5 91 31.9
vmacro02392 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 1.5e-06 58.5 91 33.0
vmacro15103 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 1.5e-06 58.5 91 31.9
CBR_g1024 Chara braunii HOM05D010152 ORTHO05D007668 2.0e-06 58.2 91 30.8
Rhsim01G0292100 Rhododendron simsii HOM05D004127 ORTHO05D005119 2.0e-06 58.2 91 31.9
SalBow3G1425 Salvia bowleyana HOM05D004127 ORTHO05D005119 2.0e-06 58.2 91 31.9
Actinidia25862 Actinidia chinensis HOM05D004127 ORTHO05D005119 2.6e-06 57.8 91 31.9
Gohir.D12G127400 Gossypium hirsutum HOM05D004127 ORTHO05D005119 2.6e-06 57.8 91 31.9
Gorai.008G138300 Gossypium raimondii HOM05D004127 ORTHO05D005119 2.6e-06 57.8 91 31.9
Thecc.01G315900 Theobroma cacao HOM05D004127 ORTHO05D005119 2.6e-06 57.8 91 33.0
BcaC02g11240 Brassica carinata HOM05D004127 ORTHO05D005119 3.3e-06 57.4 92 30.4
CDE08G0979 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 3.3e-06 57.4 91 30.8
Gohir.A12G123700 Gossypium hirsutum HOM05D004127 ORTHO05D005119 3.3e-06 57.4 91 31.9
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 4.4e-06 57.0 91 30.8
CDE02G4605 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 4.4e-06 57.0 91 30.8
MBI18_g03637_MAGBIO Magnolia biondii HOM05D004127 ORTHO05D005119 4.4e-06 57.0 91 30.8
ATR0693G036 Amborella trichopoda HOM05D004127 ORTHO05D005119 5.7e-06 56.6 91 29.7
Thhalv10006755m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 5.7e-06 56.6 91 31.9
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 5.7e-06 56.6 91 31.9
THA.LOC104819204 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 5.7e-06 56.6 91 33.0
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 5.7e-06 56.6 112 29.5
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 5.7e-06 56.6 112 29.5
CARHR125030 Cardamine hirsuta HOM05D004127 ORTHO05D005119 7.4e-06 56.2 91 30.8
Gohir.D11G112800 Gossypium hirsutum HOM05D004127 ORTHO05D005119 7.4e-06 56.2 91 31.9
AL4G26650 Arabidopsis lyrata HOM05D004127 ORTHO05D005119 9.7e-06 55.8 91 31.9
Carub.0004s1272 Capsella rubella HOM05D004127 ORTHO05D005119 9.7e-06 55.8 91 30.8
Lsat_1_v5_gn_9_4701 Lactuca sativa HOM05D004127 ORTHO05D005119 9.7e-06 55.8 91 33.0


User provided reference genes

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