Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 1.6e-291 1005.4 509 100.0
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 2.3e-173 612.8 503 65.0
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 4.1e-154 548.9 502 59.8
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 7.0e-154 548.1 513 59.5
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 3.4e-148 529.3 497 59.2
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 1.5e-143 513.8 500 56.6
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 1.4e-141 507.3 496 57.9
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 2.0e-140 503.4 498 55.0
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 2.6e-140 503.1 438 59.8
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 3.7e-139 499.2 534 52.6
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 8.3e-139 498.0 537 51.2
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 1.1e-138 497.7 515 56.9
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 1.1e-138 497.7 497 55.3
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 1.4e-138 497.3 533 52.9
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 4.1e-138 495.7 535 53.8
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 5.4e-138 495.4 532 53.0
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 1.6e-137 493.8 499 56.1
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 2.3e-136 490.0 537 52.0
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 1.1e-135 487.6 512 54.9
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 5.6e-135 485.3 537 51.2
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 2.1e-134 483.4 511 55.8
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 2.1e-134 483.4 497 55.1
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 2.8e-134 483.0 500 54.0
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 3.6e-134 482.6 500 55.8
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 3.6e-134 482.6 537 51.6
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 6.2e-134 481.9 498 55.2
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 8.1e-134 481.5 501 56.9
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 1.1e-133 481.1 535 51.4
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 1.1e-133 481.1 506 55.7
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 1.8e-133 480.3 505 53.9
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 3.1e-133 479.6 505 53.7
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 5.2e-133 478.8 505 53.5
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 6.8e-133 478.4 511 53.4
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 6.8e-133 478.4 511 53.4
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 7.5e-132 474.9 496 55.2
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 1.7e-131 473.8 507 53.3
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.7e-131 472.6 502 53.0
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 6.4e-131 471.9 499 54.3
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 8.3e-131 471.5 501 53.9
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 2.4e-130 469.9 533 52.3
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 3.2e-130 469.5 497 51.5
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 5.4e-130 468.8 501 53.9
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 2.1e-129 466.8 514 52.7
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 7.8e-129 464.9 500 53.4
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 1.7e-128 463.8 496 54.6
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.7e-128 463.8 496 54.6
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.0e-128 463.0 495 52.5
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 8.6e-128 461.5 582 49.0
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 1.9e-127 460.3 493 52.7
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 3.3e-127 459.5 496 54.2
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.6e-126 457.2 496 54.2
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 1.8e-125 453.8 505 53.3
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 6.8e-125 451.8 516 49.8
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 8.9e-125 451.4 505 51.3
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 3.4e-124 449.5 495 51.5
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 9.9e-124 448.0 497 51.9
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 9.9e-124 448.0 520 53.3
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 1.9e-122 443.7 496 52.8
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 7.8e-121 438.3 524 51.5
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 2.3e-120 436.8 497 49.9
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 2.3e-120 436.8 505 49.1
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 1.5e-119 434.1 491 49.3
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 2.6e-116 423.3 502 50.0
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 3.2e-114 416.4 436 51.8
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 5.4e-114 415.6 504 49.0
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 7.1e-114 415.2 452 50.7
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 2.1e-113 413.7 503 49.9
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 1.3e-112 411.0 520 50.0
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 6.6e-112 408.7 502 49.2
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 8.7e-112 408.3 504 48.8
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 3.3e-111 406.4 507 47.5
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 9.6e-111 404.8 501 47.9
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 2.8e-110 403.3 522 45.2
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 4.0e-109 399.4 501 48.7
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 9.0e-109 398.3 505 48.9
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 9.0e-109 398.3 512 46.1
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 5.4e-106 389.0 506 47.4
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 9.3e-106 388.3 503 47.3
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 2.3e-104 383.6 503 46.5
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 1.1e-103 381.3 503 46.3
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 1.5e-103 380.9 500 47.4
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 2.5e-103 380.2 503 46.5
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 3.3e-103 379.8 406 54.2
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 4.8e-102 375.9 497 47.3
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 8.1e-102 375.2 368 57.1
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 5.6e-95 352.4 437 51.0
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 4.5e-92 342.8 433 46.0
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 5.8e-92 342.4 428 48.4
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 4.2e-90 336.3 495 42.4
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 7.9e-89 332.0 497 43.3
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 2.3e-80 303.9 499 39.3
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 1.2e-76 291.6 514 40.5
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 8.5e-75 285.4 504 38.3
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.5e-74 283.9 351 47.6
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 2.2e-67 260.8 249 57.0
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 1.6e-65 254.6 253 53.8
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 1.0e-64 251.9 233 58.4
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.8e-64 251.1 311 49.2
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 5.7e-63 246.1 545 33.0
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 1.3e-62 245.0 235 57.9
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 2.9e-59 233.8 363 42.7
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 3.2e-58 230.3 266 47.4
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 7.5e-55 219.2 576 31.8
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 4.1e-53 213.4 274 47.8
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 1.0e-51 208.8 124 80.6
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 8.8e-48 195.7 124 76.6
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 5.7e-47 193.0 517 28.8
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 2.8e-46 190.7 460 30.7
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 6.3e-46 189.5 215 51.6
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 1.7e-30 138.3 143 51.7
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 1.2e-28 132.1 203 36.9
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 3.0e-27 127.5 69 88.4
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 4.7e-25 120.2 73 78.1
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 6.2e-25 119.8 183 41.5
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 1.9e-18 98.2 119 49.6
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 1.1e-16 92.4 93 53.8
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 6.8e-16 89.7 45 95.6
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 1.5e-15 88.6 136 36.8
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 4.9e-14 83.6 55 76.4
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 2.4e-08 64.7 122 36.9
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 5.8e-07 60.1 46 63.0
Medtr6g471100 Medicago truncatula HOM05D000162 ORTHO05D000090 6.4e-06 56.6 137 29.9
Zm00001eb135490 Zea mays HOM05D006388 ORTHO05D008026 8.4e-06 56.2 198 30.3


User provided reference genes

Program Settings