Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 1.2e-166 589.7 297 100.0
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 6.4e-83 311.6 291 57.7
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 9.3e-82 307.8 291 55.7
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 3.5e-81 305.8 287 56.1
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.9e-79 300.1 292 55.1
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 3.7e-78 295.8 278 54.3
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 3.7e-78 295.8 278 55.8
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 5.8e-76 288.5 299 51.8
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 7.6e-76 288.1 278 58.3
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 4.9e-75 285.4 292 55.1
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 8.4e-75 284.6 292 52.1
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.2e-73 280.8 292 52.4
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 2.7e-73 279.6 290 54.8
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.0e-72 277.7 294 53.1
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.3e-72 277.3 295 51.2
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.1e-72 275.4 277 52.0
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 6.7e-72 275.0 279 55.2
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 8.7e-72 274.6 278 52.2
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 1.5e-71 273.9 292 51.0
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 3.3e-71 272.7 278 51.8
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 3.3e-71 272.7 290 54.5
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 4.3e-71 272.3 290 53.8
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 7.4e-71 271.6 292 51.4
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.6e-70 270.4 279 54.1
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 2.2e-70 270.0 278 50.7
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 2.2e-70 270.0 297 48.8
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 6.3e-70 268.5 296 51.4
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 6.3e-70 268.5 290 53.1
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.4e-69 267.3 296 50.3
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 1.8e-69 266.9 283 54.4
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 2.4e-69 266.5 293 51.5
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.4e-69 266.5 289 50.5
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 6.9e-69 265.0 290 52.8
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.5e-68 263.8 273 53.1
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.5e-68 263.8 278 50.7
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 2.0e-68 263.5 278 51.4
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 4.5e-68 262.3 300 46.7
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 7.7e-68 261.5 294 47.6
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.0e-67 261.2 296 47.3
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 1.3e-67 260.8 284 48.9
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.7e-67 260.4 296 50.0
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.2e-67 260.0 291 46.0
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 2.9e-67 259.6 297 49.8
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 3.8e-67 259.2 285 49.8
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 5.0e-67 258.8 291 46.0
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 1.1e-66 257.7 277 49.5
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.9e-66 256.9 298 44.6
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.5e-66 256.5 298 44.3
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 2.5e-66 256.5 274 51.8
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.5e-66 256.5 279 49.1
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 3.2e-66 256.1 293 46.1
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 7.2e-66 255.0 298 44.0
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.6e-65 253.8 291 50.9
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.6e-65 252.7 278 48.6
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.6e-65 252.3 291 44.7
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 4.6e-65 252.3 278 48.6
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 1.4e-64 250.8 293 45.4
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 1.4e-64 250.8 293 45.4
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 1.4e-64 250.8 290 45.5
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.4e-64 250.8 300 46.0
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 1.4e-64 250.8 278 48.9
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 1.8e-64 250.4 278 47.8
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.8e-64 250.4 278 47.8
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.9e-64 249.2 290 46.9
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 4.3e-63 245.7 278 46.4
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 5.7e-63 245.4 279 48.4
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.3e-62 244.2 289 45.7
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 1.3e-62 244.2 292 43.5
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 2.2e-62 243.4 292 44.2
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 4.8e-62 242.3 297 45.5
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 8.2e-62 241.5 278 48.9
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.4e-61 240.7 278 45.7
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.8e-61 240.4 292 43.5
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.8e-61 240.4 280 46.8
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.8e-61 240.4 278 45.7
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 2.4e-61 240.0 282 43.6
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 3.1e-61 239.6 279 47.7
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 4.1e-61 239.2 278 46.4
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 5.3e-61 238.8 274 46.0
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 5.3e-61 238.8 274 46.0
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 1.5e-60 237.3 290 47.6
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 2.0e-60 236.9 300 45.3
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 4.5e-60 235.7 296 44.9
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.7e-59 233.8 278 47.1
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 5.0e-59 232.3 282 45.0
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 5.0e-59 232.3 292 45.9
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 6.5e-59 231.9 284 47.5
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.4e-58 230.7 278 45.0
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.9e-58 230.3 296 44.3
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.9e-58 230.3 284 43.0
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 2.5e-58 229.9 293 43.0
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 3.2e-58 229.6 209 59.8
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 4.2e-58 229.2 285 43.5
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 9.4e-58 228.0 296 44.3
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.1e-57 226.9 291 43.6
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 2.7e-57 226.5 301 42.2
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.6e-57 226.1 278 46.8
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 7.9e-57 224.9 278 45.3
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 1.0e-56 224.6 278 45.7
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 1.8e-56 223.8 280 42.9
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.8e-56 223.8 279 44.8
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 2.3e-56 223.4 301 42.2
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 2.3e-56 223.4 301 42.2
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 6.7e-56 221.9 278 43.2
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 8.8e-56 221.5 278 43.2
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 2.0e-55 220.3 280 42.1
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 4.4e-55 219.2 279 44.1
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 5.7e-55 218.8 282 43.3
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 5.7e-55 218.8 278 42.8
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.3e-54 217.6 297 44.4
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 1.3e-54 217.6 296 42.2
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.7e-54 217.2 247 48.6
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 2.2e-54 216.9 277 44.0
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 3.7e-54 216.1 278 42.8
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 6.3e-54 215.3 277 44.8
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 8.2e-54 214.9 247 47.8
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.4e-53 214.2 279 40.9
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.4e-53 213.4 278 45.3
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 2.4e-53 213.4 278 43.2
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 5.9e-52 208.8 301 42.2
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 2.9e-51 206.5 278 41.4
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.9e-51 206.5 293 40.3
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 6.5e-51 205.3 278 42.4
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 9.4e-50 201.4 291 43.3
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 8.0e-49 198.4 284 41.9
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.9e-48 196.1 237 43.9
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 8.8e-48 194.9 279 40.9
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.1e-47 194.5 237 43.9
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.5e-47 194.1 287 39.0
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 1.1e-45 188.0 268 42.5
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 1.7e-43 180.6 269 41.6
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 2.5e-42 176.8 200 49.5
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 7.2e-42 175.3 280 39.3
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 9.4e-42 174.9 289 37.0
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 4.7e-41 172.6 284 34.9
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.2e-39 167.9 295 35.6
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 5.7e-39 165.6 210 41.4
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.2e-38 163.7 134 56.7
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 1.3e-35 154.5 210 41.0
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 8.5e-35 151.8 128 55.5
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 8.5e-35 151.8 274 39.4
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.2e-34 149.8 134 53.0
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 5.9e-28 129.0 288 33.7
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 2.8e-22 110.2 274 31.4
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 2.9e-19 100.1 99 46.5
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 2.3e-16 90.5 127 42.5
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.8e-08 64.3 39 71.8


User provided reference genes

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