Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 3.1e-113 411.8 203 100.0
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 2.6e-83 312.4 202 76.7
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 6.6e-79 297.7 202 73.3
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 1.5e-78 296.6 206 74.8
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 4.3e-78 295.0 203 71.9
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 9.5e-78 293.9 206 74.3
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 1.6e-77 293.1 203 71.4
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 3.6e-77 292.0 202 72.8
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 6.2e-77 291.2 196 73.5
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 8.1e-77 290.8 203 70.9
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 1.4e-76 290.0 203 71.4
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 4.0e-76 288.5 183 78.7
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 1.2e-75 287.0 202 68.8
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 1.5e-75 286.6 203 67.5
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 7.5e-75 284.3 201 68.7
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 2.2e-74 282.7 202 67.8
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 2.9e-74 282.3 205 71.7
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 8.3e-74 280.8 192 73.4
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 1.9e-73 279.6 204 71.6
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 1.9e-73 279.6 209 68.9
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 2.4e-73 279.3 195 69.2
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 3.2e-73 278.9 184 72.3
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 3.2e-73 278.9 190 72.1
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 3.2e-73 278.9 204 69.1
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 4.6e-72 275.0 195 69.2
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 6.0e-72 274.6 195 69.7
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 6.0e-72 274.6 195 69.7
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 6.0e-72 274.6 201 68.2
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 7.8e-72 274.2 200 69.5
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 2.3e-71 272.7 206 67.5
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 3.0e-71 272.3 212 68.9
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 8.6e-71 270.8 192 71.9
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 1.1e-70 270.4 204 66.2
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 1.1e-70 270.4 192 71.4
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 1.9e-70 269.6 191 69.6
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 3.3e-70 268.9 195 66.7
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 9.5e-70 267.3 192 70.8
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 1.2e-69 266.9 192 70.8
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 2.8e-69 265.8 204 68.6
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.4e-68 263.5 205 65.4
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.4e-68 263.5 214 63.1
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 1.8e-68 263.1 202 64.4
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 6.8e-68 261.2 193 67.9
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 1.2e-67 260.4 203 62.1
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.2e-67 260.4 206 64.1
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 1.2e-67 260.4 206 64.1
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 2.0e-67 259.6 206 65.0
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 1.3e-66 256.9 190 66.8
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 3.7e-66 255.4 197 66.5
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 6.4e-66 254.6 200 64.0
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 1.4e-65 253.4 206 62.1
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 2.4e-65 252.7 194 64.9
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 5.4e-65 251.5 206 59.7
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 1.2e-64 250.4 201 59.7
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 2.1e-64 249.6 184 65.8
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 2.7e-64 249.2 194 63.4
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 2.7e-64 249.2 188 64.4
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 3.5e-64 248.8 203 62.6
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 1.0e-63 247.3 182 68.1
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 1.0e-63 247.3 182 69.2
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 2.3e-63 246.1 180 67.8
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 3.0e-63 245.7 174 68.4
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 3.0e-63 245.7 179 68.2
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 3.0e-63 245.7 200 63.5
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 3.9e-63 245.4 161 72.0
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 5.1e-63 245.0 165 71.5
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 1.1e-62 243.8 181 66.9
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 2.5e-62 242.7 210 57.6
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 2.5e-62 242.7 161 70.2
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 2.5e-62 242.7 179 67.6
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 2.5e-62 242.7 179 65.9
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.2e-61 240.4 181 69.6
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 1.1e-60 237.3 192 63.5
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 1.8e-60 236.5 175 66.3
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 4.0e-60 235.3 160 68.8
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 8.9e-60 234.2 162 69.8
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 1.5e-59 233.4 160 68.1
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 4.4e-59 231.9 209 56.0
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 4.4e-59 231.9 174 63.8
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.4e-59 231.9 208 58.2
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 4.4e-59 231.9 194 61.3
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 7.6e-59 231.1 158 70.9
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 1.7e-58 229.9 174 62.6
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.2e-58 229.6 193 60.1
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 3.8e-58 228.8 183 64.5
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 4.9e-58 228.4 174 62.6
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 4.9e-58 228.4 183 60.7
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 6.4e-58 228.0 174 62.6
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 6.4e-58 228.0 174 62.6
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 6.4e-58 228.0 174 62.6
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 6.4e-58 228.0 142 71.1
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 1.4e-57 226.9 135 74.1
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 4.2e-57 225.3 162 67.3
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 7.1e-57 224.6 215 55.8
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 4.6e-56 221.9 125 82.4
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 1.3e-55 220.3 145 72.4
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 3.0e-55 219.2 165 66.7
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 3.0e-55 219.2 132 77.3
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 3.3e-54 215.7 210 54.8
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 5.6e-54 214.9 166 63.9
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 1.3e-53 213.8 127 84.3
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 3.8e-50 202.2 137 65.7
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 4.2e-49 198.7 175 58.9
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 9.6e-46 187.6 146 55.5
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 1.6e-45 186.8 127 72.4
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 1.1e-44 184.1 145 69.7
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 1.1e-44 184.1 145 69.7
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 3.1e-44 182.6 136 62.5
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 6.9e-44 181.4 133 66.2
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 1.2e-43 180.6 111 72.1
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 5.6e-38 161.8 186 49.5
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.7e-34 150.2 128 60.2
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.2e-32 144.1 93 75.3
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 2.1e-32 143.3 80 85.0
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 6.0e-32 141.7 155 45.8
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 1.5e-30 137.1 80 81.2
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 9.6e-30 134.4 128 46.1
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 6.3e-29 131.7 129 52.7
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 8.2e-29 131.3 122 50.0
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 7.6e-27 124.8 122 54.9
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 7.4e-22 108.2 115 52.2
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 2.1e-16 90.1 114 35.1
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 2.5e-09 66.6 40 70.0
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 1.0e-07 61.2 128 30.5


User provided reference genes

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