Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 7.3e-138 493.8 236 100.0
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 2.8e-129 465.3 236 94.9
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 7.8e-124 447.2 236 91.1
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 1.0e-123 446.8 237 92.0
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 3.0e-123 445.3 236 91.9
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 2.9e-86 322.4 235 66.8
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 9.7e-82 307.4 235 65.5
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 1.2e-79 300.4 236 62.7
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 5.9e-79 298.1 234 63.7
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 2.2e-78 296.2 232 64.7
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 4.2e-77 292.0 235 61.3
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 9.4e-77 290.8 235 62.1
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 1.2e-76 290.4 235 61.7
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 4.6e-76 288.5 229 62.0
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 6.1e-76 288.1 235 60.9
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 1.0e-75 287.3 236 62.3
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 2.3e-75 286.2 235 60.4
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 8.8e-75 284.3 235 61.3
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.5e-74 282.7 236 61.0
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 2.5e-74 282.7 244 58.2
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.5e-74 282.7 230 60.4
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 2.5e-74 282.7 236 59.3
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 5.7e-74 281.6 236 59.3
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 7.4e-74 281.2 239 59.0
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 9.7e-74 280.8 230 60.0
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.7e-73 280.0 230 60.0
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.2e-73 279.6 230 59.6
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 2.8e-73 279.3 233 59.7
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 3.7e-73 278.9 236 58.5
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 3.7e-73 278.9 231 59.3
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 4.8e-73 278.5 232 57.3
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 1.1e-72 277.3 245 59.6
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 1.4e-72 276.9 228 60.1
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 3.1e-72 275.8 236 58.5
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 5.3e-72 275.0 236 58.5
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 6.9e-72 274.6 238 55.5
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 9.1e-72 274.2 235 58.7
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 9.1e-72 274.2 236 64.4
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 9.1e-72 274.2 236 58.5
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 1.2e-71 273.9 238 58.0
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 1.5e-71 273.5 233 58.8
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 3.4e-71 272.3 234 58.5
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 5.9e-71 271.6 229 61.1
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 3.8e-70 268.9 228 56.1
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 8.5e-70 267.7 236 56.8
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 2.5e-69 266.2 237 62.9
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 4.2e-69 265.4 235 57.4
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 7.2e-69 264.6 232 56.0
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 9.4e-69 264.2 228 55.7
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 7.9e-68 261.2 230 53.5
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 1.0e-67 260.8 233 52.4
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 1.0e-67 260.8 236 54.7
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 1.4e-67 260.4 236 54.7
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 2.3e-67 259.6 237 54.0
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 5.1e-67 258.5 236 53.8
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 6.7e-67 258.1 236 54.2
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 1.1e-66 257.3 237 55.3
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 3.3e-66 255.8 236 54.2
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 5.7e-66 255.0 239 54.4
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 9.7e-66 254.2 242 56.2
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 9.7e-66 254.2 237 52.7
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 2.8e-65 252.7 235 56.2
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 3.7e-65 252.3 237 53.2
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 4.8e-65 251.9 235 53.2
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 6.3e-65 251.5 232 51.7
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 1.8e-64 250.0 237 53.2
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 3.1e-64 249.2 232 54.3
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 3.1e-64 249.2 233 53.2
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 3.1e-64 249.2 237 53.2
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 7.0e-64 248.1 236 51.7
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 9.1e-64 247.7 233 51.5
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 2.6e-63 246.1 241 51.0
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 4.5e-63 245.4 240 52.1
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 4.5e-63 245.4 235 53.2
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 5.9e-63 245.0 234 52.6
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 7.7e-63 244.6 236 51.7
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 7.7e-63 244.6 235 51.1
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 1.7e-62 243.4 232 50.4
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 3.8e-62 242.3 235 52.8
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 1.1e-61 240.7 236 53.0
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 5.5e-61 238.4 233 48.9
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 7.2e-61 238.0 233 51.5
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 7.2e-61 238.0 236 51.7
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 9.4e-61 237.7 232 49.6
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 1.2e-60 237.3 233 50.2
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 1.6e-60 236.9 233 50.2
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 1.6e-60 236.9 228 50.4
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 5.2e-59 231.9 235 49.8
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 6.7e-59 231.5 231 47.6
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 6.7e-59 231.5 130 89.2
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 1.1e-58 230.7 229 52.4
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 2.0e-58 229.9 234 50.4
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 4.4e-58 228.8 238 50.0
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 4.2e-53 212.2 234 47.9
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 3.0e-51 206.1 182 58.8
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 6.8e-51 204.9 232 47.0
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 2.6e-50 203.0 193 54.9
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 2.8e-49 199.5 239 48.1
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 4.8e-49 198.7 208 48.1
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 6.3e-49 198.4 206 47.6
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 6.3e-49 198.4 110 90.0
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 7.0e-48 194.9 109 88.1
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 1.6e-47 193.7 173 53.2
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 3.2e-45 186.0 188 48.4
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 4.7e-44 182.2 191 47.6
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 7.0e-40 168.3 133 58.6
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 6.6e-38 161.8 230 37.0
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 4.3e-37 159.1 178 49.4
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 7.2e-37 158.3 119 59.7
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 7.5e-34 148.3 146 54.1
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 8.3e-33 144.8 103 65.0
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 1.4e-32 144.1 192 37.5
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 7.3e-29 131.7 210 38.1
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 7.5e-26 121.7 137 46.0
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 2.2e-25 120.2 113 58.4
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 5.4e-24 115.5 194 36.1
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 2.7e-23 113.2 194 35.1
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 2.3e-22 110.2 243 31.7
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 6.6e-22 108.6 122 48.4
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 8.3e-17 91.7 214 29.0
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 3.2e-16 89.7 55 74.5
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 5.6e-13 79.0 48 68.8
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 1.4e-11 74.3 107 43.0
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 1.8e-11 73.9 79 46.8
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 3.7e-09 66.2 107 31.8
Cre03.g200651 Chlamydomonas reinhardtii HOM05D006625 ORTHO05D008060 6.6e-06 55.5 125 28.8


User provided reference genes

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