Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 2.9e-227 792.0 529 100.0
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 4.1e-149 532.3 545 71.4
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 1.7e-147 526.9 553 71.2
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 3.3e-146 522.7 547 74.8
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 9.2e-141 504.6 590 65.3
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.1e-139 498.8 548 67.7
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.5e-138 496.5 548 67.5
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 4.7e-137 492.3 559 68.0
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.4e-133 479.9 549 64.5
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 2.1e-132 476.9 553 66.2
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 7.8e-132 474.9 550 69.8
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 1.3e-131 474.2 556 64.7
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 5.1e-131 472.2 553 66.2
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 3.3e-130 469.5 550 60.5
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.3e-129 467.6 550 68.5
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.8e-129 465.7 551 62.4
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 1.1e-128 464.5 547 60.7
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 2.4e-128 463.4 552 66.3
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 6.9e-128 461.8 549 61.4
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 2.0e-127 460.3 540 67.2
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.6e-127 459.9 546 65.9
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.6e-127 459.9 548 66.6
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 7.6e-127 458.4 558 64.5
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 4.9e-126 455.7 550 66.7
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 8.4e-126 454.9 546 60.6
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.1e-125 454.5 551 63.2
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 4.2e-125 452.6 547 67.1
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 2.7e-124 449.9 550 61.8
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 6.0e-124 448.7 547 64.4
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.3e-123 447.6 561 63.3
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 3.0e-123 446.4 555 67.7
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 1.5e-122 444.1 551 61.2
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 4.3e-122 442.6 550 60.0
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 4.3e-122 442.6 538 63.2
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 5.6e-122 442.2 543 61.3
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.3e-121 441.0 550 58.9
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 1.6e-121 440.7 545 60.6
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 2.8e-121 439.9 549 63.9
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 3.7e-121 439.5 549 62.3
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.1e-120 438.0 551 64.6
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 3.1e-120 436.4 548 63.9
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 5.3e-120 435.6 539 58.6
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 6.9e-120 435.3 551 64.6
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 4.5e-119 432.6 548 63.1
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 5.8e-119 432.2 552 63.0
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 6.4e-118 428.7 572 57.5
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 6.4e-118 428.7 560 60.7
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.1e-117 427.9 550 62.9
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 3.2e-117 426.4 553 59.3
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 7.1e-117 425.2 552 59.4
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 2.7e-116 423.3 548 59.7
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 3.5e-116 422.9 546 64.3
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 1.0e-115 421.4 534 62.2
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 1.3e-115 421.0 574 61.7
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.8e-115 420.6 534 62.0
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 3.0e-115 419.9 549 62.8
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 4.3e-114 416.0 563 62.0
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 5.6e-114 415.6 557 60.0
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 9.6e-114 414.8 548 61.9
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 1.6e-113 414.1 547 60.0
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 2.1e-113 413.7 561 56.5
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 1.4e-112 411.0 554 64.3
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 3.1e-112 409.8 554 64.1
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 4.0e-112 409.5 552 62.0
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.2e-111 407.9 558 56.8
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.5e-111 407.5 543 62.8
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 2.6e-111 406.8 540 62.8
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 3.4e-111 406.4 546 63.7
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 2.2e-110 403.7 548 57.8
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 1.9e-109 400.6 541 63.8
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 1.9e-109 400.6 547 66.7
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 2.5e-109 400.2 550 62.7
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 4.2e-109 399.4 551 57.7
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 2.1e-108 397.1 539 57.7
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 3.5e-108 396.4 553 58.2
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 6.0e-108 395.6 570 60.9
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 8.7e-107 391.7 549 59.4
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 8.7e-107 391.7 555 56.0
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 1.9e-106 390.6 552 65.6
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 2.5e-106 390.2 577 50.6
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 1.3e-105 387.9 549 60.3
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.3e-105 387.9 549 59.4
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 3.7e-105 386.3 550 65.5
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.1e-104 384.8 547 61.4
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 7.7e-103 378.6 572 58.0
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 2.2e-102 377.1 549 59.6
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.6e-100 369.8 557 61.6
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 1.8e-99 367.5 554 56.9
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 6.7e-99 365.5 553 56.1
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 8.2e-97 358.6 565 58.9
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 2.7e-92 343.6 547 59.8
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 7.9e-92 342.0 540 55.9
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 1.5e-90 337.8 531 57.3
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 2.0e-87 327.4 487 59.1
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 8.5e-86 322.0 551 52.6
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 3.2e-85 320.1 469 58.8
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 1.2e-84 318.2 594 52.2
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 1.2e-84 318.2 551 53.7
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 3.6e-84 316.6 564 49.6
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.6e-82 310.5 392 65.3
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 7.4e-82 308.9 283 77.4
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 1.1e-80 305.1 549 55.0
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 4.1e-80 303.1 549 51.7
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 1.2e-79 301.6 559 54.9
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 4.5e-79 299.7 556 55.0
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 6.5e-78 295.8 490 59.2
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.1e-77 295.0 548 53.5
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.1e-77 295.0 586 48.0
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 1.5e-77 294.7 559 50.1
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 2.7e-76 290.4 467 54.0
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 1.4e-75 288.1 548 49.5
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 8.8e-75 285.4 570 53.5
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 1.2e-74 285.0 371 51.8
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 9.7e-74 282.0 570 48.1
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 9.1e-72 275.4 165 84.8
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-71 275.0 232 72.0
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 8.5e-70 268.9 592 48.1
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 1.5e-69 268.1 588 47.8
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 1.6e-68 264.6 154 89.6
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 4.5e-63 246.5 307 59.9
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 1.2e-58 231.9 176 71.6
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.3e-57 228.4 477 45.3
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 8.6e-54 215.7 165 73.3
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 8.9e-51 205.7 526 41.3
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 1.7e-49 201.4 440 48.9
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 2.0e-47 194.5 397 47.1
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 6.8e-43 179.5 280 56.1
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 2.4e-40 171.0 239 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 2.4e-32 144.4 508 40.9
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 3.0e-30 137.5 112 72.3
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.1e-28 131.3 115 66.1
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.1e-28 131.3 74 86.5
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 1.7e-25 121.7 119 65.5
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 2.2e-25 121.3 81 70.4
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.4e-25 119.8 175 57.1
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 7.1e-24 116.3 114 61.4
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 1.3e-22 112.1 111 64.9
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 4.8e-20 103.6 168 42.3
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 8.1e-20 102.8 64 85.9
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.9e-17 94.4 105 59.0
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 3.8e-17 94.0 103 59.2
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 1.1e-13 82.4 58 82.8
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 1.5e-13 82.0 86 58.1
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.5e-13 81.3 113 55.8
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.6e-12 78.6 78 65.4
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.6e-12 78.6 78 65.4
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.6e-12 77.4 46 84.8
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.2e-08 63.9 113 62.8
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 2.1e-07 61.6 156 31.4
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 2.3e-06 58.2 87 48.3
SEGI_10093 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 5.1e-06 57.0 87 47.1
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 5.1e-06 57.0 88 46.6
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 6.7e-06 56.6 81 49.4


User provided reference genes

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