Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.9e-159 565.8 303 100.0
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 2.8e-89 332.8 308 64.3
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 2.6e-87 326.2 307 60.9
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 7.0e-85 318.2 301 62.5
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.6e-84 315.5 303 60.4
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 2.1e-81 306.6 298 61.7
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 6.2e-81 305.1 307 59.3
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.1e-80 302.8 308 58.4
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 5.2e-80 302.0 288 63.9
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 2.6e-79 299.7 302 59.9
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.7e-78 297.0 289 60.9
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.9e-78 296.2 301 59.1
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.9e-77 293.5 302 58.9
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.9e-77 293.5 299 58.5
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 4.1e-77 292.4 309 60.5
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.2e-76 290.8 305 57.7
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 3.5e-76 289.3 303 57.8
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 6.0e-76 288.5 300 57.3
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 1.3e-75 287.3 304 60.2
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 3.0e-75 286.2 303 59.4
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.1e-73 280.0 303 55.8
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.1e-73 280.0 307 57.3
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 3.6e-73 279.3 301 57.1
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 6.8e-72 275.0 283 59.7
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.2e-71 274.2 303 57.4
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.0e-71 273.5 305 55.1
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.4e-71 272.7 303 54.1
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 5.8e-71 271.9 309 55.7
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 5.8e-71 271.9 299 55.2
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 7.5e-71 271.6 304 59.5
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 1.3e-70 270.8 307 55.4
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 1.3e-70 270.8 312 52.9
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 2.2e-70 270.0 301 55.8
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 4.9e-70 268.9 302 56.3
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 4.1e-69 265.8 311 54.3
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 5.4e-69 265.4 303 55.4
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 1.6e-68 263.8 306 53.6
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 2.1e-68 263.5 306 56.5
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 2.7e-68 263.1 310 54.5
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 3.5e-68 262.7 298 55.4
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 3.0e-67 259.6 302 56.6
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 8.6e-67 258.1 302 54.6
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 1.1e-66 257.7 317 54.3
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 2.5e-66 256.5 313 54.0
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 7.3e-66 255.0 314 52.5
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 7.3e-66 255.0 301 53.5
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 7.3e-66 255.0 307 53.1
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 9.5e-66 254.6 307 53.1
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 4.7e-65 252.3 313 53.0
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 6.8e-64 248.4 307 53.4
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 8.9e-64 248.1 303 53.5
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 3.4e-63 246.1 306 52.9
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 4.4e-63 245.7 307 53.4
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 7.6e-63 245.0 303 53.1
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 9.9e-63 244.6 304 53.0
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.3e-62 244.2 302 51.7
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 1.7e-62 243.8 302 52.3
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.2e-62 243.4 310 50.6
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 2.9e-62 243.0 303 53.5
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 3.8e-62 242.7 286 52.8
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 8.4e-62 241.5 307 53.1
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.4e-61 240.7 305 54.1
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.4e-61 240.7 307 55.0
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 3.2e-61 239.6 303 52.1
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 3.2e-61 239.6 309 50.5
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 3.2e-61 239.6 199 67.3
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.1e-61 239.2 307 54.1
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.7e-60 236.5 305 53.4
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 3.5e-60 236.1 300 51.7
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 3.5e-60 236.1 300 53.0
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 3.5e-60 236.1 310 51.3
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 4.6e-60 235.7 307 50.5
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 1.3e-59 234.2 300 49.3
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 3.9e-59 232.6 302 52.0
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 4.3e-58 229.2 299 50.5
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 2.8e-57 226.5 310 48.7
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.8e-57 226.5 303 52.1
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 4.7e-57 225.7 309 51.5
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.1e-56 224.6 310 51.9
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 1.8e-56 223.8 303 52.5
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 2.4e-56 223.4 309 48.5
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 3.1e-56 223.0 307 49.8
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 4.0e-56 222.6 304 48.7
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 1.2e-55 221.1 311 48.6
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 2.0e-55 220.3 311 49.8
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 3.4e-55 219.5 310 48.1
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 4.4e-55 219.2 322 47.8
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 5.8e-55 218.8 198 62.1
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 9.9e-55 218.0 312 51.3
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 9.9e-55 218.0 264 52.3
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 9.9e-55 218.0 275 53.5
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 9.9e-55 218.0 342 46.5
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 2.2e-54 216.9 220 58.2
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 6.4e-54 215.3 305 50.8
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 1.4e-53 214.2 310 48.7
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.4e-53 214.2 231 56.3
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 7.1e-53 211.8 310 49.0
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 2.7e-52 209.9 312 48.1
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 4.6e-52 209.1 306 48.4
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 1.0e-51 208.0 303 47.9
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.1e-50 204.5 279 48.7
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 1.1e-50 204.5 297 48.5
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 1.6e-49 200.7 300 47.0
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 2.1e-49 200.3 337 46.3
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 2.1e-49 200.3 299 47.8
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 2.8e-49 199.9 301 48.8
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 8.1e-49 198.4 338 43.8
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 2.6e-47 193.4 302 45.7
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 4.5e-47 192.6 288 49.3
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.3e-46 191.0 309 46.3
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.2e-46 190.3 306 46.7
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 4.9e-46 189.1 305 43.3
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 9.3e-45 184.9 303 41.9
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 3.0e-43 179.9 287 43.6
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 1.9e-42 177.2 304 40.8
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 4.0e-40 169.5 191 53.4
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 4.0e-40 169.5 192 54.7
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 5.3e-40 169.1 305 41.3
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 8.4e-38 161.8 356 39.6
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 8.4e-38 161.8 302 42.4
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 1.9e-37 160.6 288 43.4
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 1.2e-36 157.9 206 50.0
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.3e-35 154.5 197 50.8
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 8.7e-35 151.8 309 41.7
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 3.3e-34 149.8 294 39.1
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 5.6e-34 149.1 317 40.1
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 1.1e-32 144.8 287 40.4
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 2.4e-32 143.7 317 39.7
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 2.4e-32 143.7 317 39.7
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 2.4e-32 143.7 317 39.7
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 1.2e-31 141.4 318 37.4
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 3.9e-27 126.3 151 53.0
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 2.4e-24 117.1 340 32.9
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 1.0e-11 75.1 185 34.6
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 3.9e-11 73.2 160 31.2
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 6.7e-11 72.4 109 41.3
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 8.8e-11 72.0 90 42.2
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 8.8e-11 72.0 89 43.8
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 1.3e-09 68.2 158 31.6
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 1.3e-09 68.2 90 41.1
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.2e-09 67.4 138 33.3
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 2.2e-09 67.4 158 36.7
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.8e-09 67.0 138 33.3
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 2.8e-09 67.0 90 40.0
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 2.8e-09 67.0 76 39.5
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 3.7e-09 66.6 109 33.9
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 3.7e-09 66.6 109 33.9
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 4.8e-09 66.2 77 37.7
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 4.8e-09 66.2 164 30.5
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 8.2e-09 65.5 182 31.9
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 1.1e-08 65.1 121 33.9
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 1.1e-08 65.1 188 28.2
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 1.1e-08 65.1 159 35.2
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 1.4e-08 64.7 113 37.2
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 1.4e-08 64.7 109 35.8
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 1.8e-08 64.3 94 39.4
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 1.8e-08 64.3 90 38.9
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 1.8e-08 64.3 204 29.9
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 3.1e-08 63.5 149 30.9
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 4.1e-08 63.2 42 73.8
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 7.0e-08 62.4 120 33.3
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 7.0e-08 62.4 135 30.4
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 1.2e-07 61.6 74 39.2
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 2.6e-07 60.5 72 43.1
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 2.6e-07 60.5 127 31.5
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 3.4e-07 60.1 164 29.3
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 4.5e-07 59.7 123 34.1
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 4.5e-07 59.7 132 31.1
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 5.9e-07 59.3 159 32.1
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 7.7e-07 58.9 117 32.5
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 1.0e-06 58.5 120 31.7
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 2.2e-06 57.4 144 31.2
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 3.8e-06 56.6 76 36.8
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 5.0e-06 56.2 214 26.6
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 8.5e-06 55.5 180 28.9


User provided reference genes

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