Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A110G120 Lonicera japonica HOM05D000618 ORTHO05D000454 2.1e-60 235.7 140 100.0
vmacro17541 Vaccinium macrocarpon HOM05D000618 ORTHO05D000454 9.0e-19 97.4 93 59.1
Dinv19963 Davidia involucrata HOM05D000618 ORTHO05D000454 2.0e-18 96.3 93 55.9
Actinidia04887 Actinidia chinensis HOM05D000618 ORTHO05D000454 4.5e-18 95.1 93 57.0
Lj9A464T87 Lonicera japonica HOM05D000618 ORTHO05D000454 5.8e-18 94.7 94 59.6
ClCG04G012230 Citrullus lanatus HOM05D000618 ORTHO05D000454 1.1e-16 90.5 92 53.3
MELO3C001985.2 Cucumis melo HOM05D000618 ORTHO05D000454 1.1e-16 90.5 92 53.3
CsaV3_1G005520 Cucumis sativus L. HOM05D000618 ORTHO05D000454 1.1e-16 90.5 92 53.3
Cpa.g.sc111.9 Carica papaya HOM05D000618 ORTHO05D000454 2.5e-16 89.4 94 53.2
Dinv38713 Davidia involucrata HOM05D000618 ORTHO05D000454 2.5e-16 89.4 93 54.8
QL10p017026 Quercus lobata HOM05D000618 ORTHO05D000454 3.2e-16 89.0 82 65.9
TAR371G1289 Trochodendron aralioides HOM05D000618 ORTHO05D000454 3.2e-16 89.0 81 59.3
Atru.chr9.226 Acer truncatum HOM05D000618 ORTHO05D000454 4.2e-16 88.6 93 51.6
Actinidia37627 Actinidia chinensis HOM05D000618 ORTHO05D000454 4.2e-16 88.6 93 53.8
Duzib068G1252 Durio zibethinus HOM05D000618 ORTHO05D000454 9.3e-16 87.4 99 53.5
Duzib084G0238 Durio zibethinus HOM05D000618 ORTHO05D000454 1.2e-15 87.0 93 57.0
CAN.G837.19 Capsicum annuum HOM05D000618 ORTHO05D000454 3.5e-15 85.5 93 55.9
Peaxi162Scf00274g00627 Petunia axillaris HOM05D000618 ORTHO05D000454 3.5e-15 85.5 93 55.9
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 4.6e-15 85.1 93 52.7
Rhsim08G0154800 Rhododendron simsii HOM05D000618 ORTHO05D000454 6.0e-15 84.7 93 52.7
PGSC0003DMG400019512 Solanum tuberosum HOM05D000618 ORTHO05D000454 6.0e-15 84.7 82 59.8
Gohir.D12G180000 Gossypium hirsutum HOM05D000618 ORTHO05D000454 7.9e-15 84.3 93 54.8
Gorai.008G193100 Gossypium raimondii HOM05D000618 ORTHO05D000454 7.9e-15 84.3 93 54.8
Gohir.A12G177600 Gossypium hirsutum HOM05D000618 ORTHO05D000454 1.0e-14 84.0 93 54.8
Nitab4.5_0006000g0110 Nicotiana tabacum HOM05D000618 ORTHO05D000454 1.0e-14 84.0 84 58.3
Nitab4.5_0001128g0130 Nicotiana tabacum HOM05D000618 ORTHO05D000454 1.3e-14 83.6 84 59.5
Thecc.03G087700 Theobroma cacao HOM05D000618 ORTHO05D000454 1.3e-14 83.6 92 54.3
Prupe.5G193700 Prunus persica HOM05D000618 ORTHO05D000454 1.8e-14 83.2 93 51.6
vmacro16546 Vaccinium macrocarpon HOM05D000618 ORTHO05D000454 1.8e-14 83.2 94 50.0
Sopen03g035020 Solanum pennellii HOM05D000618 ORTHO05D000454 2.3e-14 82.8 93 53.8
GSVIVG01008001001 Vitis vinifera HOM05D000618 ORTHO05D000454 2.3e-14 82.8 96 51.0
Oeu002101.1 Olea europaea HOM05D000618 ORTHO05D000454 3.0e-14 82.4 93 49.5
Ciclev10021492m.g Citrus clementina HOM05D000618 ORTHO05D000454 5.1e-14 81.6 92 51.1
Solyc03g116030.4 Solanum lycopersicum HOM05D000618 ORTHO05D000454 5.1e-14 81.6 95 51.6
Haze_07325 Corylus avellana HOM05D000618 ORTHO05D000454 6.7e-14 81.3 81 59.3
Eucgr.B00506 Eucalyptus grandis HOM05D000618 ORTHO05D000454 6.7e-14 81.3 93 52.7
Rhsim12G0156200 Rhododendron simsii HOM05D000618 ORTHO05D000454 6.7e-14 81.3 84 54.8
Sed0027104 Sechium edule HOM05D000618 ORTHO05D000454 6.7e-14 81.3 92 50.0
Manes.06G092200 Manihot esculenta HOM05D000618 ORTHO05D000454 1.1e-13 80.5 93 49.5
CSS0049542 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 1.5e-13 80.1 93 53.8
Nn4g23169 Nelumbo nucifera HOM05D000618 ORTHO05D000454 1.5e-13 80.1 93 49.5
TWI81G0744 Tripterygium wilfordii HOM05D000618 ORTHO05D000454 1.5e-13 80.1 94 52.1
TWI60G0555 Tripterygium wilfordii HOM05D000618 ORTHO05D000454 1.9e-13 79.7 94 52.1
Cfa018941 Carpinus fangiana HOM05D000618 ORTHO05D000454 3.3e-13 79.0 92 52.2
Duzib205G1270 Durio zibethinus HOM05D000618 ORTHO05D000454 4.3e-13 78.6 92 52.2
CSS0008186 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 9.6e-13 77.4 81 53.1
CSS0041018 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 9.6e-13 77.4 81 53.1
MBI05_g45847_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 9.6e-13 77.4 99 45.5
Nn3g17243 Nelumbo nucifera HOM05D000618 ORTHO05D000454 9.6e-13 77.4 102 48.0
Cc00_g23100 Coffea canephora HOM05D000618 ORTHO05D000454 1.3e-12 77.0 92 46.7
Oeu047296.2 Olea europaea HOM05D000618 ORTHO05D000454 2.1e-12 76.3 93 49.5
Peaxi162Scf01256g00225 Petunia axillaris HOM05D000618 ORTHO05D000454 2.1e-12 76.3 90 51.1
TAR374G1382 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.8e-12 75.9 93 47.3
MD06G1193400 Malus domestica HOM05D000618 ORTHO05D000454 4.8e-12 75.1 93 48.4
MBI05_g29536_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 6.3e-12 74.7 101 44.6
Nitab4.5_0007189g0020 Nicotiana tabacum HOM05D000618 ORTHO05D000454 8.2e-12 74.3 82 56.1
MBI02_g08836_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 1.1e-11 73.9 99 44.4
Sed0011815 Sechium edule HOM05D000618 ORTHO05D000454 1.4e-11 73.6 92 46.7
Manes.14G078200 Manihot esculenta HOM05D000618 ORTHO05D000454 1.8e-11 73.2 93 48.4
Solyc06g069780.4 Solanum lycopersicum HOM05D000618 ORTHO05D000454 2.4e-11 72.8 92 50.0
Sopen06g027070 Solanum pennellii HOM05D000618 ORTHO05D000454 2.4e-11 72.8 92 50.0
COL.COLO4_09291 Corchorus olitorius HOM05D000618 ORTHO05D000454 3.1e-11 72.4 92 44.6
RcHm_v2.0_Chr7g0181451 Rosa chinensis HOM05D000618 ORTHO05D000454 3.1e-11 72.4 94 46.8
PGSC0003DMG400033082 Solanum tuberosum HOM05D000618 ORTHO05D000454 3.1e-11 72.4 92 50.0
Actinidia34999 Actinidia chinensis HOM05D000618 ORTHO05D000454 5.3e-11 71.6 95 52.6
HanXRQChr02g0038931 Helianthus annuus HOM05D000618 ORTHO05D000454 5.3e-11 71.6 94 46.8
Nitab4.5_0011015g0020 Nicotiana tabacum HOM05D000618 ORTHO05D000454 6.9e-11 71.2 92 50.0
Dinv16648 Davidia involucrata HOM05D000558 ORTHO05D003119 9.0e-11 70.9 84 48.8
Nitab4.5_0000889g0060 Nicotiana tabacum HOM05D000618 ORTHO05D000454 9.0e-11 70.9 92 48.9
CiPaw.11G044700 Carya illinoinensis HOM05D000618 ORTHO05D000454 1.2e-10 70.5 95 45.3
FAN13G1704 Fragaria x ananassa HOM05D000618 ORTHO05D000454 1.2e-10 70.5 96 43.8
THA.LOC104821422 Tarenaya hassleriana HOM05D000618 ORTHO05D000454 1.2e-10 70.5 90 44.4
Hund02649 Selenicereus undatus HOM05D000618 ORTHO05D000454 2.0e-10 69.7 93 44.1
FvH4_5g14930 Fragaria vesca HOM05D000618 ORTHO05D000454 2.6e-10 69.3 96 42.7
Gohir.D11G034600 Gossypium hirsutum HOM05D000618 ORTHO05D000454 2.6e-10 69.3 93 44.1
Gorai.007G037500 Gossypium raimondii HOM05D000618 ORTHO05D000454 2.6e-10 69.3 93 44.1
CiPaw.12G013200 Carya illinoinensis HOM05D000618 ORTHO05D000454 3.4e-10 68.9 82 50.0
Dinv34154 Davidia involucrata HOM05D000618 ORTHO05D000454 3.4e-10 68.9 91 46.2
Duzib248G1097 Durio zibethinus HOM05D000618 ORTHO05D000454 3.4e-10 68.9 90 43.3
Gohir.A11G031241 Gossypium hirsutum HOM05D000618 ORTHO05D000454 4.5e-10 68.6 93 44.1
DCAR_016557 Daucus carota HOM05D000618 ORTHO05D000454 5.9e-10 68.2 93 46.2
Sc04g0002650 Simmondsia chinensis HOM05D000618 ORTHO05D000454 5.9e-10 68.2 92 43.5
Carub.0008s2313 Capsella rubella HOM05D000618 ORTHO05D000454 7.6e-10 67.8 98 42.9
MD14G1200500 Malus domestica HOM05D000618 ORTHO05D000454 7.6e-10 67.8 94 45.7
Ah.02g113520 Amaranthus hybridus HOM05D000618 ORTHO05D000454 1.0e-09 67.4 91 44.0
COL.COLO4_23016 Corchorus olitorius HOM05D000618 ORTHO05D000454 1.0e-09 67.4 90 41.1
FAN18G2626 Fragaria x ananassa HOM05D000618 ORTHO05D000454 1.0e-09 67.4 98 41.8
FAN08G3388 Fragaria x ananassa HOM05D000618 ORTHO05D000454 1.3e-09 67.0 85 45.9
PGR083G0801 Punica granatum HOM05D000618 ORTHO05D000454 1.3e-09 67.0 100 44.0
Duzib268G1471 Durio zibethinus HOM05D000618 ORTHO05D000454 1.7e-09 66.6 91 45.1
EL10Ac5g11020 Beta vulgaris HOM05D000618 ORTHO05D000454 2.2e-09 66.2 91 47.3
Sp5g14330 Schrenkiella parvula HOM05D000618 ORTHO05D000454 2.2e-09 66.2 94 46.8
HPP92_016796 Vanilla planifolia HOM05D000618 ORTHO05D000454 2.2e-09 66.2 91 45.1
Aa31LG4G16340 Aethionema arabicum HOM05D000618 ORTHO05D000454 2.9e-09 65.9 94 45.7
AT3G47550 Arabidopsis thaliana HOM05D000618 ORTHO05D000454 3.8e-09 65.5 96 49.0
FAN13G2712 Fragaria x ananassa HOM05D000618 ORTHO05D000454 3.8e-09 65.5 85 45.9
Hma1.2p1_0735F.1_g210700 Hydrangea macrophylla HOM05D000618 ORTHO05D000454 3.8e-09 65.5 93 45.2
CANSAT64G2282 Cannabis sativa HOM05D000618 ORTHO05D000454 5.0e-09 65.1 101 41.6
HPP92_016828 Vanilla planifolia HOM05D000618 ORTHO05D000454 5.0e-09 65.1 91 44.0
HPP92_011248 Vanilla planifolia HOM05D000618 ORTHO05D000454 6.5e-09 64.7 91 44.0
Ciclev10032323m.g Citrus clementina HOM05D000618 ORTHO05D000454 8.5e-09 64.3 90 45.6
DCAR_031023 Daucus carota HOM05D000618 ORTHO05D000454 8.5e-09 64.3 90 36.7
AL5G26790 Arabidopsis lyrata HOM05D000618 ORTHO05D000454 1.1e-08 63.9 96 45.8
BolC2t12277H Brassica oleracea HOM05D000618 ORTHO05D000454 1.4e-08 63.5 90 41.1
CAN.G628.3 Capsicum annuum HOM05D000618 ORTHO05D000454 1.4e-08 63.5 95 46.3
Haze_12010 Corylus avellana HOM05D000618 ORTHO05D000454 1.4e-08 63.5 90 42.2
Aqoxy3G00637 Aquilegia oxysepala HOM05D000618 ORTHO05D000454 1.9e-08 63.2 93 40.9
AL8G39350 Arabidopsis lyrata HOM05D000618 ORTHO05D000454 1.9e-08 63.2 97 39.2
Carub.0005s1363 Capsella rubella HOM05D000618 ORTHO05D000454 1.9e-08 63.2 96 43.8
ATR0564G463 Amborella trichopoda HOM05D000618 ORTHO05D000454 2.5e-08 62.8 103 39.8
RcHm_v2.0_Chr4g0439841 Rosa chinensis HOM05D000618 ORTHO05D000454 2.5e-08 62.8 91 42.9
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 2.5e-08 62.8 93 41.9
AUR62008419 Chenopodium quinoa HOM05D000618 ORTHO05D000454 3.2e-08 62.4 90 42.2
Gohir.D12G168100 Gossypium hirsutum HOM05D000618 ORTHO05D000454 3.2e-08 62.4 90 40.0
Nitab4.5_0002635g0070 Nicotiana tabacum HOM05D000618 ORTHO05D000454 4.2e-08 62.0 101 35.6
Lsat_1_v5_gn_1_12921 Lactuca sativa HOM05D000618 ORTHO05D000454 5.5e-08 61.6 96 38.5
PGR044G1492 Punica granatum HOM05D000618 ORTHO05D000454 5.5e-08 61.6 95 40.0
C02p62190 Brassica napus HOM05D000618 ORTHO05D000454 7.2e-08 61.2 90 40.0
BraA06t25866Z Brassica rapa HOM05D000618 ORTHO05D000454 7.2e-08 61.2 99 40.4
CiPaw.06G085200 Carya illinoinensis HOM05D000618 ORTHO05D000454 7.2e-08 61.2 94 43.6
Hma1.2p1_0795F.1_g218840 Hydrangea macrophylla HOM05D000618 ORTHO05D000454 7.2e-08 61.2 108 39.8
BcaC03g18150 Brassica carinata HOM05D000618 ORTHO05D000454 9.3e-08 60.8 90 38.9
A02p42320 Brassica napus HOM05D000618 ORTHO05D000454 9.3e-08 60.8 94 43.6
BraA02t09161Z Brassica rapa HOM05D000618 ORTHO05D000454 9.3e-08 60.8 94 43.6
Gohir.A12G165000 Gossypium hirsutum HOM05D000618 ORTHO05D000454 9.3e-08 60.8 90 42.2
Gohir.D11G034900 Gossypium hirsutum HOM05D000618 ORTHO05D000454 9.3e-08 60.8 93 40.9
MD13G1072100 Malus domestica HOM05D000618 ORTHO05D000454 9.3e-08 60.8 94 41.5
THA.LOC104822125 Tarenaya hassleriana HOM05D000618 ORTHO05D000454 9.3e-08 60.8 91 40.7
BcaB01g00908 Brassica carinata HOM05D000618 ORTHO05D000454 1.6e-07 60.1 97 45.4
BcaC01g02472 Brassica carinata HOM05D000618 ORTHO05D000454 1.6e-07 60.1 99 38.4
C03p64420 Brassica napus HOM05D000618 ORTHO05D000454 1.6e-07 60.1 99 38.4
BolC3t18697H Brassica oleracea HOM05D000618 ORTHO05D000454 1.6e-07 60.1 99 39.4
CARHR156180 Cardamine hirsuta HOM05D000618 ORTHO05D000454 1.6e-07 60.1 94 45.7
Gohir.A11G031421 Gossypium hirsutum HOM05D000618 ORTHO05D000454 1.6e-07 60.1 93 40.9
A06p27230 Brassica napus HOM05D000618 ORTHO05D000454 2.1e-07 59.7 92 43.5
BraA06t25664Z Brassica rapa HOM05D000618 ORTHO05D000454 2.1e-07 59.7 92 43.5
Hma1.2p1_0265F.1_g106790 Hydrangea macrophylla HOM05D000618 ORTHO05D000454 2.1e-07 59.7 93 38.7
DCAR_007152 Daucus carota HOM05D000618 ORTHO05D000454 2.7e-07 59.3 92 37.0
DCAR_016438 Daucus carota HOM05D000618 ORTHO05D000454 2.7e-07 59.3 92 37.0
Thhalv10004664m.g Eutrema salsugineum HOM05D000618 ORTHO05D000454 2.7e-07 59.3 100 40.0
FAN17G1748 Fragaria x ananassa HOM05D000618 ORTHO05D000454 2.7e-07 59.3 90 40.0
Sp2g25640 Schrenkiella parvula HOM05D000618 ORTHO05D000454 2.7e-07 59.3 101 40.6
Thhalv10010967m.g Eutrema salsugineum HOM05D000618 ORTHO05D000454 3.6e-07 58.9 95 43.2
Gorai.008G181000 Gossypium raimondii HOM05D000618 ORTHO05D000454 3.6e-07 58.9 79 43.0
SGA_v2.0_scaffold302G47815 Striga asiatica HOM05D000618 ORTHO05D000454 3.6e-07 58.9 90 41.1
THA.LOC104808720 Tarenaya hassleriana HOM05D000618 ORTHO05D000454 3.6e-07 58.9 90 40.0
Potri.008G086300 Populus trichocarpa HOM05D000618 ORTHO05D000454 4.6e-07 58.5 90 41.1
TPR.G39179 Trifolium pratense HOM05D000618 ORTHO05D000454 4.6e-07 58.5 92 42.4
BcaB02g10694 Brassica carinata HOM05D000618 ORTHO05D000454 6.1e-07 58.2 90 42.2
Gohir.A03G101100 Gossypium hirsutum HOM05D000618 ORTHO05D000454 6.1e-07 58.2 90 40.0
Gohir.D13G074900 Gossypium hirsutum HOM05D000618 ORTHO05D000454 6.1e-07 58.2 94 41.5
Gorai.013G085600 Gossypium raimondii HOM05D000618 ORTHO05D000454 6.1e-07 58.2 94 41.5
Lalb_Chr09g0329261 Lupinus albus HOM05D000618 ORTHO05D000454 6.1e-07 58.2 90 42.2
AT5G62460 Arabidopsis thaliana HOM05D000618 ORTHO05D000454 7.9e-07 57.8 95 36.8
Gohir.A13G074700 Gossypium hirsutum HOM05D000618 ORTHO05D000454 7.9e-07 57.8 94 41.5
Gohir.D02G125900 Gossypium hirsutum HOM05D000618 ORTHO05D000454 7.9e-07 57.8 90 40.0
Gorai.005G141600 Gossypium raimondii HOM05D000618 ORTHO05D000454 7.9e-07 57.8 90 40.0
MSTRG.7800 Avicennia marina HOM05D000618 ORTHO05D000454 1.3e-06 57.0 100 38.0
Lalb_Chr05g0220341 Lupinus albus HOM05D000618 ORTHO05D000454 1.3e-06 57.0 90 40.0
Hund05878 Selenicereus undatus HOM05D000618 ORTHO05D000454 1.3e-06 57.0 93 40.9
BcaB02g09649 Brassica carinata HOM05D000618 ORTHO05D000454 1.8e-06 56.6 96 36.5
Duzib251G0706 Durio zibethinus HOM05D000618 ORTHO05D000454 1.8e-06 56.6 94 42.6
Phvul.002G085200 Phaseolus vulgaris HOM05D000618 ORTHO05D000454 1.8e-06 56.6 97 35.1
Cpa.g.sc128.25 Carica papaya HOM05D000618 ORTHO05D000454 2.3e-06 56.2 97 37.1
FvH4_4g31340 Fragaria vesca HOM05D000618 ORTHO05D000454 2.3e-06 56.2 91 39.6
FAN12G1916 Fragaria x ananassa HOM05D000618 ORTHO05D000454 2.3e-06 56.2 91 39.6
Oeu022758.1 Olea europaea HOM05D000618 ORTHO05D000454 2.3e-06 56.2 96 38.5
PSO017G2728 Papaver somniferum HOM05D000618 ORTHO05D000454 2.3e-06 56.2 93 41.9
Potri.010G169200 Populus trichocarpa HOM05D000618 ORTHO05D000454 2.3e-06 56.2 93 39.8
CDE08G0483 Ceratophyllum demersum HOM05D000618 ORTHO05D000454 3.0e-06 55.8 98 36.7
AUR62021676 Chenopodium quinoa HOM05D000618 ORTHO05D000454 3.0e-06 55.8 95 41.1
Psat2g119880 Pisum sativum HOM05D000618 ORTHO05D000454 3.0e-06 55.8 104 38.5
EL10Ac6g13207 Beta vulgaris HOM05D000618 ORTHO05D000454 3.9e-06 55.5 90 35.6
BcaB07g29838 Brassica carinata HOM05D000618 ORTHO05D000454 3.9e-06 55.5 65 49.2
Manes.01G185400 Manihot esculenta HOM05D000618 ORTHO05D000454 3.9e-06 55.5 95 36.8
A06p29170 Brassica napus HOM05D000618 ORTHO05D000454 5.1e-06 55.1 94 34.0
Ca_22900_v3 Cicer arietinum L. HOM05D000618 ORTHO05D000454 5.1e-06 55.1 92 40.2
Oeu054875.1 Olea europaea HOM05D000618 ORTHO05D000454 5.1e-06 55.1 90 37.8
Psat4g131440 Pisum sativum HOM05D000618 ORTHO05D000454 5.1e-06 55.1 92 42.4
Sabra08G0064100 Salix brachista HOM05D000618 ORTHO05D000454 5.1e-06 55.1 90 38.9
arahy.Tifrunner.gnm1.ann1.DWF5LN Arachis hypogaea HOM05D000618 ORTHO05D000454 6.7e-06 54.7 99 39.4
ECA246G2097 Erigeron canadensis HOM05D000618 ORTHO05D000454 6.7e-06 54.7 90 40.0
Migut.L01292 Erythranthe guttata HOM05D000618 ORTHO05D000454 6.7e-06 54.7 97 40.2
PSO478G4145 Papaver somniferum HOM05D000618 ORTHO05D000454 6.7e-06 54.7 93 40.9
Actinidia04103 Actinidia chinensis HOM05D000618 ORTHO05D000454 8.7e-06 54.3 90 37.8
MD16G1072700 Malus domestica HOM05D000618 ORTHO05D000454 8.7e-06 54.3 95 37.9
PGR102G2380 Punica granatum HOM05D000618 ORTHO05D000454 8.7e-06 54.3 90 41.1


User provided reference genes

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