Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A107T96 Lonicera japonica HOM05D003031 ORTHO05D003371 5.8e-55 217.2 104 100.0
PGR083G0559 Punica granatum HOM05D003031 ORTHO05D003371 3.3e-18 95.1 62 72.6
Nn7g37963 Nelumbo nucifera HOM05D003031 ORTHO05D003371 7.4e-18 94.0 53 84.9
Cpa.g.sc13.303 Carica papaya HOM05D003031 ORTHO05D003371 1.3e-17 93.2 58 74.1
Sabra12G0047700 Salix brachista HOM05D003031 ORTHO05D003371 1.3e-17 93.2 62 71.0
Actinidia19015 Actinidia chinensis HOM05D003031 ORTHO05D003371 1.6e-17 92.8 58 74.1
Rhsim12G0153500 Rhododendron simsii HOM05D003031 ORTHO05D003371 1.6e-17 92.8 61 73.8
GSVIVG01007955001 Vitis vinifera HOM05D003031 ORTHO05D003371 1.6e-17 92.8 61 73.8
FvH4_5g14460 Fragaria vesca HOM05D003031 ORTHO05D003371 2.2e-17 92.4 61 75.4
FAN08G0457 Fragaria x ananassa HOM05D003031 ORTHO05D003371 2.2e-17 92.4 61 75.4
FAN18G0620 Fragaria x ananassa HOM05D003031 ORTHO05D003371 2.2e-17 92.4 61 75.4
Gohir.D12G182400 Gossypium hirsutum HOM05D003031 ORTHO05D003371 2.2e-17 92.4 62 69.4
Gorai.008G195700 Gossypium raimondii HOM05D003031 ORTHO05D003371 2.2e-17 92.4 62 69.4
Manes.06G088700 Manihot esculenta HOM05D003031 ORTHO05D003371 2.8e-17 92.0 61 73.8
Potri.012G067700 Populus trichocarpa HOM05D003031 ORTHO05D003371 2.8e-17 92.0 62 71.0
RcHm_v2.0_Chr7g0182201 Rosa chinensis HOM05D003031 ORTHO05D003371 2.8e-17 92.0 61 73.8
CSS0035239 Camellia sinensis var. sinensis HOM05D003031 ORTHO05D003371 3.7e-17 91.7 58 72.4
Ciclev10022490m.g Citrus clementina HOM05D003031 ORTHO05D003371 3.7e-17 91.7 61 72.1
COL.COLO4_35582 Corchorus olitorius HOM05D003031 ORTHO05D003371 3.7e-17 91.7 59 72.9
Duzib205G0885 Durio zibethinus HOM05D003031 ORTHO05D003371 4.8e-17 91.3 62 69.4
Gohir.A12G179800 Gossypium hirsutum HOM05D003031 ORTHO05D003371 6.3e-17 90.9 62 67.7
TWI60G0174 Tripterygium wilfordii HOM05D003031 ORTHO05D003371 6.3e-17 90.9 61 72.1
Prupe.5G199100 Prunus persica HOM05D003031 ORTHO05D003371 8.2e-17 90.5 54 79.6
QL10p017973 Quercus lobata HOM05D003031 ORTHO05D003371 8.2e-17 90.5 60 70.0
vmacro16521 Vaccinium macrocarpon HOM05D003031 ORTHO05D003371 8.2e-17 90.5 54 79.6
Cfa019280 Carpinus fangiana HOM05D001252 ORTHO05D003371 1.1e-16 90.1 61 72.1
ClCG06G015940 Citrullus lanatus HOM05D003031 ORTHO05D003371 1.8e-16 89.4 61 68.9
DCAR_026032 Daucus carota HOM05D003031 ORTHO05D003371 2.4e-16 89.0 59 69.5
Dinv10667 Davidia involucrata HOM05D003031 ORTHO05D003371 3.1e-16 88.6 57 75.4
TAR374G1100 Trochodendron aralioides HOM05D003031 ORTHO05D003371 3.1e-16 88.6 56 76.8
Hma1.2p1_0322F.1_g124980 Hydrangea macrophylla HOM05D003031 ORTHO05D003371 4.1e-16 88.2 61 70.5
Sc10g0009810 Simmondsia chinensis HOM05D003031 ORTHO05D003371 4.1e-16 88.2 56 75.0
MSTRG.22993 Avicennia marina HOM05D003031 ORTHO05D003371 5.3e-16 87.8 60 68.3
Eucgr.B00552 Eucalyptus grandis HOM05D003031 ORTHO05D003371 5.3e-16 87.8 61 72.1
Hund02619 Selenicereus undatus HOM05D003031 ORTHO05D003371 5.3e-16 87.8 62 67.7
CANSAT80G2319 Cannabis sativa HOM05D003031 ORTHO05D003371 6.9e-16 87.4 54 74.1
CsaV3_1G002610 Cucumis sativus L. HOM05D003031 ORTHO05D003371 6.9e-16 87.4 58 69.0
Nitab4.5_0001997g0010 Nicotiana tabacum HOM05D003031 ORTHO05D003371 6.9e-16 87.4 54 74.1
Cc04_g14320 Coffea canephora HOM05D003031 ORTHO05D003371 9.0e-16 87.0 54 75.9
MD14G1205900 Malus domestica HOM05D003031 ORTHO05D003371 9.0e-16 87.0 54 75.9
Oeu031810.1 Olea europaea HOM05D003031 ORTHO05D003371 9.0e-16 87.0 54 74.1
Peaxi162Scf00106g00517 Petunia axillaris HOM05D003031 ORTHO05D003371 9.0e-16 87.0 58 69.0
Thecc.03G095000 Theobroma cacao HOM05D003031 ORTHO05D003371 9.0e-16 87.0 60 68.3
Nitab4.5_0008485g0020 Nicotiana tabacum HOM05D003031 ORTHO05D003371 1.5e-15 86.3 61 67.2
PGSC0003DMG400015000 Solanum tuberosum HOM05D003031 ORTHO05D003371 1.5e-15 86.3 61 65.6
Thhalv10008859m.g Eutrema salsugineum HOM05D003031 ORTHO05D003371 2.0e-15 85.9 55 72.7
Sopen12g016470 Solanum pennellii HOM05D003031 ORTHO05D003371 2.6e-15 85.5 61 65.6
SGA_v2.0_scaffold313G48319 Striga asiatica HOM05D003031 ORTHO05D003371 2.6e-15 85.5 62 67.7
arahy.Tifrunner.gnm1.ann1.0SW4QZ Arachis hypogaea HOM05D003031 ORTHO05D003371 3.4e-15 85.1 50 80.0
arahy.Tifrunner.gnm1.ann1.W106X3 Arachis hypogaea HOM05D003031 ORTHO05D003371 3.4e-15 85.1 50 80.0
MBI05_g02666_MAGBIO Magnolia biondii HOM05D003031 ORTHO05D003371 3.4e-15 85.1 54 72.2
Aa31LG7G3440 Aethionema arabicum HOM05D003031 ORTHO05D003371 4.5e-15 84.7 55 70.9
BcaC07g41308 Brassica carinata HOM05D003031 ORTHO05D003371 4.5e-15 84.7 55 70.9
A09p59770 Brassica napus HOM05D003031 ORTHO05D003371 4.5e-15 84.7 55 70.9
C08p43150 Brassica napus HOM05D003031 ORTHO05D003371 4.5e-15 84.7 55 70.9
BolC8t51870H Brassica oleracea HOM05D003031 ORTHO05D003371 4.5e-15 84.7 55 70.9
BraA09t41354Z Brassica rapa HOM05D003031 ORTHO05D003371 4.5e-15 84.7 55 70.9
CARHR019310 Cardamine hirsuta HOM05D003031 ORTHO05D003371 4.5e-15 84.7 55 70.9
Sp1g16660 Schrenkiella parvula HOM05D003031 ORTHO05D003371 5.9e-15 84.3 54 72.2
TAR629G1820 Trochodendron aralioides HOM05D003031 ORTHO05D003371 7.7e-15 84.0 54 72.2
Aqoxy3G03516 Aquilegia oxysepala HOM05D003031 ORTHO05D003371 1.0e-14 83.6 54 74.1
CAN.G370.13 Capsicum annuum HOM05D003031 ORTHO05D003371 1.0e-14 83.6 61 65.6
Lj4g0026736 Lotus japonicus HOM05D003031 ORTHO05D003371 1.0e-14 83.6 54 72.2
Solyc12g036250.2 Solanum lycopersicum HOM05D003031 ORTHO05D003371 1.0e-14 83.6 56 71.4
Atru.chr9.307 Acer truncatum HOM05D003031 ORTHO05D003371 1.7e-14 82.8 54 70.4
Migut.I00223 Erythranthe guttata HOM05D003031 ORTHO05D003371 1.7e-14 82.8 60 63.3
THA.LOC104812097 Tarenaya hassleriana HOM05D003031 ORTHO05D003371 1.7e-14 82.8 55 70.9
AT1G18680 Arabidopsis thaliana HOM05D003031 ORTHO05D003371 2.2e-14 82.4 55 70.9
Carub.0001s1831 Capsella rubella HOM05D003031 ORTHO05D003371 2.2e-14 82.4 55 70.9
Lalb_Chr13g0303041 Lupinus albus HOM05D003031 ORTHO05D003371 2.9e-14 82.0 54 70.4
AL1G31130 Arabidopsis lyrata HOM05D003031 ORTHO05D003371 3.8e-14 81.6 55 72.7
EL10Ac5g11072 Beta vulgaris HOM05D003031 ORTHO05D003371 3.8e-14 81.6 54 70.4
AUR62008472 Chenopodium quinoa HOM05D003031 ORTHO05D003371 3.8e-14 81.6 54 66.7
AUR62021620 Chenopodium quinoa HOM05D003031 ORTHO05D003371 3.8e-14 81.6 54 66.7
Duzib068G0828 Durio zibethinus HOM05D003031 ORTHO05D003371 3.8e-14 81.6 61 67.2
Os10g0335200 Oryza sativa ssp. japonica HOM05D003031 ORTHO05D003371 3.8e-14 81.6 54 70.4
BcaB03g14490 Brassica carinata HOM05D003031 ORTHO05D003371 5.0e-14 81.3 55 69.1
Ah.02g113830 Amaranthus hybridus HOM05D003031 ORTHO05D003371 6.5e-14 80.9 56 64.3
unitig_750.g28508 Utricularia gibba HOM05D003031 ORTHO05D003371 8.5e-14 80.5 55 67.3
ECA246G4182 Erigeron canadensis HOM05D000403 ORTHO05D000350 1.4e-13 79.7 54 66.7
TPR.G2033 Trifolium pratense HOM05D003031 ORTHO05D003371 1.4e-13 79.7 54 66.7
Zm00001eb224060 Zea mays HOM05D003031 ORTHO05D003371 1.9e-13 79.3 54 70.4
CDE02G1609 Ceratophyllum demersum HOM05D003031 ORTHO05D003371 2.5e-13 79.0 50 74.0
MD06G1198200 Malus domestica HOM05D003031 ORTHO05D003371 2.5e-13 79.0 47 80.9
Medtr4g109110 Medicago truncatula HOM05D003031 ORTHO05D003371 4.2e-13 78.2 54 66.7
Glyma.05G024300 Glycine max HOM05D003031 ORTHO05D003371 7.2e-13 77.4 55 63.6
Ca_21802_v3 Cicer arietinum L. HOM05D003031 ORTHO05D003371 9.4e-13 77.0 54 64.8
Glyma.17G103000 Glycine max HOM05D003031 ORTHO05D003371 2.1e-12 75.9 55 63.6
SHI22818 Sapria himalayana HOM05D003031 ORTHO05D003371 3.6e-12 75.1 54 66.7
Oeu046986.2 Olea europaea HOM05D003031 ORTHO05D003371 4.6e-12 74.7 53 64.2
HanXRQChr15g0481621 Helianthus annuus HOM05D003031 ORTHO05D003371 7.9e-12 73.9 54 59.3
AagrBONN_evm.TU.Sc2ySwM_228.3810 Anthoceros agrestis HOM05D003031 ORTHO05D003371 2.3e-11 72.4 59 57.6
ATR0730G144 Amborella trichopoda HOM05D003031 ORTHO05D003371 3.0e-11 72.0 54 63.0
Lsat_1_v5_gn_5_21340 Lactuca sativa HOM05D003031 ORTHO05D003371 3.0e-11 72.0 42 69.0
HPP92_020457 Vanilla planifolia HOM05D003031 ORTHO05D003371 3.9e-11 71.6 37 81.1
HPP92_026177 Vanilla planifolia HOM05D003031 ORTHO05D003371 3.9e-11 71.6 37 81.1
Pp3c18_10100 Physcomitrium patens HOM05D003031 ORTHO05D003371 5.1e-11 71.2 57 59.6
Zm00001eb017710 Zea mays HOM05D001794 ORTHO05D004177 2.0e-10 69.3 53 66.0
Zm00001eb018220 Zea mays HOM05D001794 ORTHO05D000646 7.4e-10 67.4 38 76.3
CBR_g30029 Chara braunii HOM05D003031 ORTHO05D003371 1.4e-08 63.2 56 53.6
SMO337G0021 Selaginella moellendorffii HOM05D003031 ORTHO05D003371 6.9e-08 60.8 66 48.5
Mapoly0068s0002 Marchantia polymorpha HOM05D003031 ORTHO05D003371 9.1e-08 60.5 53 56.6


User provided reference genes

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