Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 0.0e+00 1092.8 711 100.0
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 3.3e-218 762.3 700 74.1
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 4.6e-212 741.9 674 71.7
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 6.9e-208 728.0 671 68.6
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 6.9e-208 728.0 687 70.5
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 4.6e-204 715.3 685 69.3
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 2.3e-203 713.0 679 70.1
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 1.5e-202 710.3 684 69.6
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 3.1e-200 702.6 681 65.3
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 2.0e-199 699.9 668 67.5
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 5.1e-187 658.7 709 66.3
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 2.8e-169 599.7 533 70.7
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 8.0e-164 581.6 667 57.6
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 1.2e-159 567.8 683 57.1
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 1.2e-159 567.8 683 57.1
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 3.5e-159 566.2 679 58.3
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 5.9e-159 565.5 676 58.6
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 5.9e-159 565.5 687 53.1
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 6.6e-158 562.0 662 56.0
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 2.8e-156 556.6 682 55.0
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 8.0e-156 555.1 679 59.1
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.3e-155 553.5 685 58.7
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 1.3e-153 547.7 674 62.0
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 3.2e-152 543.1 696 60.9
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 3.5e-151 539.7 664 55.9
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 4.6e-151 539.3 664 60.2
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 5.9e-151 538.9 682 57.3
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 1.7e-150 537.3 701 58.8
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 5.6e-149 532.3 675 51.0
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 3.6e-148 529.6 702 59.7
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 3.6e-148 529.6 697 54.4
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 5.2e-147 525.8 663 51.9
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 8.9e-147 525.0 698 49.9
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 1.7e-145 520.8 703 53.3
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 1.6e-143 514.2 689 60.2
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 2.3e-142 510.4 694 50.0
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 6.6e-142 508.8 710 54.5
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 2.5e-141 506.9 672 54.8
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.2e-140 504.6 711 58.5
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 4.7e-140 502.7 720 57.9
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 4.0e-139 499.6 685 50.9
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 8.9e-139 498.4 672 56.1
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 1.2e-138 498.0 732 56.4
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 1.5e-138 497.7 684 50.6
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 2.6e-138 496.9 706 59.1
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.7e-137 494.2 677 51.6
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.7e-137 493.0 673 55.0
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 8.3e-137 491.9 681 51.0
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 1.4e-136 491.1 615 58.2
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 1.0e-134 485.0 529 55.2
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 1.7e-134 484.2 677 53.8
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 5.1e-134 482.6 693 56.6
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 3.3e-133 479.9 701 50.6
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 9.5e-133 478.4 517 54.2
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 3.1e-131 473.4 633 56.6
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 4.9e-129 466.1 730 51.1
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 6.4e-129 465.7 679 52.0
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 1.4e-128 464.5 535 53.3
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 8.6e-126 455.3 675 52.3
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.1e-125 454.9 672 57.6
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.5e-125 454.5 671 56.6
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 1.9e-125 454.1 514 52.7
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 3.3e-125 453.4 698 53.3
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 4.3e-125 453.0 691 51.8
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 8.9e-123 445.3 703 53.1
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 2.9e-121 440.3 684 51.0
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 4.9e-121 439.5 687 49.5
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 9.3e-120 435.3 685 52.3
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 1.6e-119 434.5 689 48.9
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 6.0e-119 432.6 690 49.7
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 1.1e-117 428.3 569 53.8
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 5.6e-117 426.0 701 51.6
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 7.3e-117 425.6 642 53.9
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 2.8e-116 423.7 699 48.8
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 3.6e-116 423.3 700 50.3
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 4.8e-116 422.9 588 51.0
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 1.4e-115 421.4 758 47.1
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 1.7e-113 414.5 523 53.2
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.1e-112 411.8 678 54.3
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 4.2e-112 409.8 507 54.6
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 1.3e-110 404.8 688 49.6
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 3.1e-107 393.7 699 54.1
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 4.0e-107 393.3 718 50.4
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 6.9e-107 392.5 521 50.5
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 7.6e-106 389.0 537 49.5
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 9.9e-106 388.7 710 50.8
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 2.9e-105 387.1 720 50.3
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 3.2e-104 383.6 694 48.1
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 5.5e-104 382.9 738 42.7
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 4.6e-103 379.8 294 65.3
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 3.0e-102 377.1 700 52.1
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 1.5e-101 374.8 708 51.0
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 4.3e-101 373.2 707 51.6
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.8e-100 370.5 430 57.7
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 1.3e-97 361.7 715 49.4
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 2.2e-97 360.9 716 51.1
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 1.9e-93 347.8 592 43.2
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 5.5e-88 329.7 701 41.8
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 1.9e-85 321.2 682 45.7
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 3.1e-83 313.9 699 43.8
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 2.0e-82 311.2 591 39.9
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 4.5e-82 310.1 692 41.6
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 5.9e-82 309.7 358 60.1
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 5.9e-82 309.7 595 41.5
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 5.9e-82 309.7 374 57.8
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 2.4e-75 287.7 555 39.1
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 3.8e-73 280.4 699 37.8
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 7.7e-66 256.1 493 40.4
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 2.2e-65 254.6 308 61.7
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 2.9e-65 254.2 193 66.8
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 3.2e-64 250.8 305 43.3
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 4.0e-54 217.2 191 56.5
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 1.7e-52 211.8 198 56.6
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 3.5e-50 204.1 531 37.5
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 1.9e-48 198.4 724 30.7
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.2e-48 197.2 256 51.2
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 3.4e-45 187.6 342 35.7
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 1.8e-43 181.8 248 39.5
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 5.0e-41 173.7 293 52.2
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.1e-40 172.6 526 32.3
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 4.7e-39 167.2 257 52.9
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 5.2e-38 163.7 399 33.6
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 1.5e-37 162.2 300 44.0
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 2.8e-31 141.4 198 42.4
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 8.3e-28 129.8 111 56.8
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 8.3e-28 129.8 259 42.5
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 3.9e-25 120.9 282 33.3
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.1e-24 119.4 252 37.3
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 3.3e-24 117.9 91 64.8
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 1.2e-21 109.4 184 39.7
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 4.1e-19 100.9 119 50.4
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 2.7e-18 98.2 94 58.5
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 6.0e-18 97.1 60 73.3
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 2.1e-15 88.6 137 45.3
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.1e-14 86.3 173 46.2
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 2.6e-13 81.6 61 60.7
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 5.8e-13 80.5 299 29.8
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 8.4e-12 76.6 161 34.8
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 1.4e-11 75.9 60 66.7
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 5.4e-11 73.9 173 29.5
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 7.1e-11 73.6 129 41.9
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 2.3e-09 68.6 57 57.9
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 5.1e-09 67.4 55 63.6
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 1.1e-08 66.2 78 43.6
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 1.1e-08 66.2 78 43.6
FAN18G3965 Fragaria x ananassa HOM05D032679 ORTHO05D022627 5.6e-08 63.9 78 42.3
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 2.8e-07 61.6 59 57.6
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 2.8e-07 61.6 48 56.2
FAN03G2005 Fragaria x ananassa HOM05D004723 ORTHO05D002269 4.7e-07 60.8 60 51.7
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 4.7e-07 60.8 60 51.7
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.1e-06 59.7 62 46.8
Eucgr.C02078 Eucalyptus grandis HOM05D000238 ORTHO05D010253 5.2e-06 57.4 45 64.4


User provided reference genes

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