Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0027943 Lotus japonicus HOM05D000905 ORTHO05D000749 9.8e-209 729.9 382 100.0
Lj6g0022720 Lotus japonicus HOM05D000905 ORTHO05D000749 1.0e-128 464.2 559 55.8
Glyma.08G313200 Glycine max HOM05D000905 ORTHO05D000749 7.7e-113 411.4 513 54.0
VMungo0540G1730 Vigna mungo HOM05D000905 ORTHO05D000749 1.1e-111 407.5 514 52.9
Glyma.18G101400 Glycine max HOM05D000905 ORTHO05D000749 3.6e-110 402.5 512 53.5
Phvul.006G039200 Phaseolus vulgaris HOM05D000905 ORTHO05D000749 8.8e-109 397.9 514 52.9
Lj4g0024955 Lotus japonicus HOM05D000905 ORTHO05D000749 2.6e-108 396.4 370 65.7
Lalb_Chr20g0113961 Lupinus albus HOM05D000905 ORTHO05D000749 2.6e-105 386.3 525 50.7
Medtr3g050060 Medicago truncatula HOM05D000905 ORTHO05D000749 2.2e-104 383.3 518 50.8
Psat5g183280 Pisum sativum HOM05D000905 ORTHO05D000749 1.0e-101 374.4 564 47.0
arahy.Tifrunner.gnm1.ann1.FI466Z Arachis hypogaea HOM05D000905 ORTHO05D000749 4.1e-98 362.5 493 50.5
arahy.Tifrunner.gnm1.ann1.83EP2I Arachis hypogaea HOM05D000905 ORTHO05D000749 1.6e-97 360.5 493 50.3
arahy.Tifrunner.gnm1.ann1.IS6ADN Arachis hypogaea HOM05D000905 ORTHO05D000749 1.6e-97 360.5 493 50.3
Ca_14811_v3 Cicer arietinum L. HOM05D000905 ORTHO05D000749 1.7e-96 357.1 513 48.9
TPR.G16589 Trifolium pratense HOM05D000905 ORTHO05D000749 5.5e-95 352.1 507 49.3
QL08p011855 Quercus lobata HOM05D000905 ORTHO05D000749 7.8e-81 305.1 518 44.4
Haze_09648 Corylus avellana HOM05D000905 ORTHO05D000749 3.1e-77 293.1 523 43.4
Cfa020384 Carpinus fangiana HOM05D000905 ORTHO05D000749 9.8e-76 288.1 525 43.2
CiPaw.11G187300 Carya illinoinensis HOM05D000905 ORTHO05D000749 1.7e-75 287.3 519 42.2
CiPaw.12G128100 Carya illinoinensis HOM05D000905 ORTHO05D000749 7.0e-74 282.0 516 43.4
Atru.chr2.3279 Acer truncatum HOM05D000905 ORTHO05D000749 3.0e-72 276.6 497 42.9
Dinv40736 Davidia involucrata HOM05D000905 ORTHO05D000749 3.9e-72 276.2 473 44.4
Duzib170G0897 Durio zibethinus HOM05D000905 ORTHO05D000749 6.6e-72 275.4 509 42.2
Potri.011G136700 Populus trichocarpa HOM05D000905 ORTHO05D000749 1.1e-71 274.6 547 40.0
Actinidia35329 Actinidia chinensis HOM05D000905 ORTHO05D000749 1.9e-71 273.9 476 43.9
Duzib268G1675 Durio zibethinus HOM05D000905 ORTHO05D000749 9.5e-71 271.6 509 42.0
vmacro09734 Vaccinium macrocarpon HOM05D000905 ORTHO05D000749 9.5e-71 271.6 466 42.9
CANSAT11G2225 Cannabis sativa HOM05D000905 ORTHO05D000749 1.1e-69 268.1 476 43.3
COL.COLO4_09633 Corchorus olitorius HOM05D000905 ORTHO05D000749 6.8e-69 265.4 505 42.0
RhsimUnG0252200 Rhododendron simsii HOM05D000905 ORTHO05D000749 6.8e-69 265.4 467 43.3
Cc05_g13520 Coffea canephora HOM05D000905 ORTHO05D000749 1.5e-68 264.2 485 42.9
MD03G1206600 Malus domestica HOM05D000905 ORTHO05D000749 1.5e-68 264.2 523 40.3
Prupe.4G209400 Prunus persica HOM05D000905 ORTHO05D000749 1.5e-68 264.2 520 41.0
Ciclev10007404m.g Citrus clementina HOM05D000905 ORTHO05D000749 2.6e-68 263.5 501 42.5
Thecc.07G043700 Theobroma cacao HOM05D000905 ORTHO05D000749 5.8e-68 262.3 509 40.9
RcHm_v2.0_Chr5g0038291 Rosa chinensis HOM05D000905 ORTHO05D000749 7.5e-68 261.9 516 40.7
Gorai.002G086800 Gossypium raimondii HOM05D000905 ORTHO05D000749 1.7e-67 260.8 508 41.1
Oeu062601.1 Olea europaea HOM05D000905 ORTHO05D000749 4.9e-67 259.2 483 42.7
TWI38G0391 Tripterygium wilfordii HOM05D000905 ORTHO05D000749 1.4e-66 257.7 518 39.4
Potri.001G421200 Populus trichocarpa HOM05D000905 ORTHO05D000749 1.9e-66 257.3 503 40.2
Gohir.D01G065100 Gossypium hirsutum HOM05D000905 ORTHO05D000749 4.1e-66 256.1 508 40.7
TAR629G1358 Trochodendron aralioides HOM05D000905 ORTHO05D000749 5.4e-66 255.8 516 39.9
Manes.15G073600 Manihot esculenta HOM05D000905 ORTHO05D000749 9.2e-66 255.0 506 41.1
Cpa.g.sc97.34 Carica papaya HOM05D000905 ORTHO05D000749 3.5e-65 253.1 517 40.8
MD11G1222000 Malus domestica HOM05D000905 ORTHO05D000749 7.8e-65 251.9 518 39.4
Sabra16G0286000 Salix brachista HOM05D000905 ORTHO05D000749 3.0e-64 250.0 525 38.9
CSS0003768 Camellia sinensis var. sinensis HOM05D000905 ORTHO05D000749 3.9e-64 249.6 471 42.5
FvH4_3g22240 Fragaria vesca HOM05D000905 ORTHO05D000749 3.9e-64 249.6 503 40.6
Sabra11G0122700 Salix brachista HOM05D000905 ORTHO05D000749 3.9e-64 249.6 493 40.8
FAN11G2009 Fragaria x ananassa HOM05D000905 ORTHO05D000749 5.1e-64 249.2 504 40.5
Gohir.A04G018700 Gossypium hirsutum HOM05D000905 ORTHO05D000749 5.1e-64 249.2 507 40.4
CSS0029322 Camellia sinensis var. sinensis HOM05D000905 ORTHO05D000749 8.6e-64 248.4 475 41.1
Manes.03G126600 Manihot esculenta HOM05D000905 ORTHO05D000749 1.1e-63 248.1 497 41.2
TWI39G0932 Tripterygium wilfordii HOM05D000905 ORTHO05D000749 1.9e-63 247.3 496 39.5
Gorai.013G160800 Gossypium raimondii HOM05D000905 ORTHO05D000749 3.3e-63 246.5 508 40.4
Gohir.D13G143800 Gossypium hirsutum HOM05D000905 ORTHO05D000749 4.3e-63 246.1 508 40.4
Gorai.009G434900 Gossypium raimondii HOM05D000905 ORTHO05D000749 9.5e-63 245.0 508 40.2
Rhsim04G0002200 Rhododendron simsii HOM05D000905 ORTHO05D000749 9.5e-63 245.0 520 38.8
FAN16G1780 Fragaria x ananassa HOM05D000905 ORTHO05D000749 2.1e-62 243.8 504 40.5
SGA_v2.0_scaffold8G04302 Striga asiatica HOM05D000905 ORTHO05D000749 4.7e-62 242.7 465 42.2
FAN25G2510 Fragaria x ananassa HOM05D000905 ORTHO05D000749 1.8e-61 240.7 504 39.9
TAR627G0016 Trochodendron aralioides HOM05D000905 ORTHO05D000749 6.8e-61 238.8 510 39.6
Migut.H01841 Erythranthe guttata HOM05D000905 ORTHO05D000749 1.5e-60 237.7 435 42.5
FAN21G4003 Fragaria x ananassa HOM05D000905 ORTHO05D000749 2.0e-60 237.3 516 39.1
MELO3C018075.2 Cucumis melo HOM05D000905 ORTHO05D000749 5.8e-60 235.7 512 38.5
Eucgr.F00965 Eucalyptus grandis HOM05D000905 ORTHO05D000749 2.2e-59 233.8 514 37.7
CsaV3_3G023290 Cucumis sativus L. HOM05D000905 ORTHO05D000749 1.1e-58 231.5 512 38.3
Nn1g03581 Nelumbo nucifera HOM05D000905 ORTHO05D000749 1.2e-57 228.0 527 37.2
Nn1g07106 Nelumbo nucifera HOM05D000905 ORTHO05D000749 2.7e-57 226.9 521 38.4
PGR083G2090 Punica granatum HOM05D000905 ORTHO05D000749 2.7e-57 226.9 485 38.6
Gohir.A01G078000 Gossypium hirsutum HOM05D000905 ORTHO05D000749 4.6e-57 226.1 505 38.0
Sed0008924 Sechium edule HOM05D000905 ORTHO05D000749 6.0e-57 225.7 516 37.6
Aqoxy4G02530_Aqoxy4G02531 Aquilegia oxysepala HOM05D000905 ORTHO05D000749 1.0e-56 224.9 508 38.0
Sc03g0008750 Simmondsia chinensis HOM05D000905 ORTHO05D000749 1.3e-56 224.6 474 38.8
DCAR_022552 Daucus carota HOM05D000905 ORTHO05D000749 3.0e-56 223.4 489 38.7
Gohir.D03G108700 Gossypium hirsutum HOM05D000905 ORTHO05D000749 5.1e-56 222.6 394 44.7
EL10Ac4g07897 Beta vulgaris HOM05D000905 ORTHO05D000749 1.6e-54 217.6 483 37.1
Lj1A869T79 Lonicera japonica HOM05D000905 ORTHO05D000749 3.6e-54 216.5 489 39.1
CAN.G1781.8 Capsicum annuum HOM05D000905 ORTHO05D000749 4.7e-54 216.1 480 37.9
Peaxi162Scf00387g00313 Petunia axillaris HOM05D000905 ORTHO05D000749 4.7e-54 216.1 481 38.3
MSTRG.14429 Avicennia marina HOM05D000905 ORTHO05D000749 8.1e-54 215.3 476 38.0
Gohir.D05G367300 Gossypium hirsutum HOM05D000905 ORTHO05D000749 1.4e-53 214.5 506 37.9
Sopen10g002300 Solanum pennellii HOM05D000905 ORTHO05D000749 8.9e-53 211.8 480 38.3
ClCG05G014420 Citrullus lanatus HOM05D000905 ORTHO05D000749 1.2e-52 211.5 559 34.9
Solyc10g006350.3 Solanum lycopersicum HOM05D000905 ORTHO05D000749 5.8e-52 209.1 480 37.7
AUR62020498 Chenopodium quinoa HOM05D000905 ORTHO05D000749 1.3e-51 208.0 483 35.8
SGA_v2.0_scaffold9G05062 Striga asiatica HOM05D000905 ORTHO05D000749 1.3e-51 208.0 462 38.1
PGSC0003DMG400014424 Solanum tuberosum HOM05D000905 ORTHO05D000749 1.7e-51 207.6 480 37.5
Peaxi162Scf00450g00847 Petunia axillaris HOM05D000905 ORTHO05D000749 2.9e-51 206.8 478 38.7
Sed0024641 Sechium edule HOM05D000905 ORTHO05D000749 3.8e-51 206.5 515 37.1
Gohir.A13G139000 Gossypium hirsutum HOM05D000905 ORTHO05D000749 6.4e-51 205.7 441 40.1
AUR62015708 Chenopodium quinoa HOM05D000905 ORTHO05D000749 1.1e-50 204.9 483 35.6
GSVIVG01037609001 Vitis vinifera HOM05D000905 ORTHO05D000749 1.9e-50 204.1 434 40.6
ATR0752G147 Amborella trichopoda HOM05D000905 ORTHO05D000749 7.1e-50 202.2 523 36.1
PSO832G2245 Papaver somniferum HOM05D000905 ORTHO05D000749 1.9e-47 194.1 491 36.9
THA.LOC104817657 Tarenaya hassleriana HOM05D000905 ORTHO05D000749 2.5e-47 193.7 481 38.5
unitig_8.g4577 Utricularia gibba HOM05D000905 ORTHO05D000749 3.3e-47 193.4 465 38.1
PSO210G2593 Papaver somniferum HOM05D000905 ORTHO05D000749 2.1e-46 190.7 474 35.9
Nitab4.5_0005048g0060 Nicotiana tabacum HOM05D000905 ORTHO05D000749 2.8e-46 190.3 472 36.9
Dinv22280 Davidia involucrata HOM05D000905 ORTHO05D000749 3.6e-46 189.9 257 51.0
Aqoxy1G03293 Aquilegia oxysepala HOM05D000905 ORTHO05D000749 4.8e-46 189.5 514 34.2
Thhalv10024370m.g Eutrema salsugineum HOM05D000905 ORTHO05D000749 1.1e-45 188.3 480 37.9
A01p18210 Brassica napus HOM05D000905 ORTHO05D000749 1.2e-44 184.9 481 37.6
Hma1.2p1_0938F.1_g239205 Hydrangea macrophylla HOM05D000905 ORTHO05D000749 3.4e-44 183.3 364 40.7
Sp7g25030 Schrenkiella parvula HOM05D000905 ORTHO05D000749 3.4e-44 183.3 486 38.1
BraA01t01776Z Brassica rapa HOM05D000905 ORTHO05D000749 5.8e-44 182.6 478 37.4
BcaC09g50620 Brassica carinata HOM05D000905 ORTHO05D000749 1.3e-43 181.4 478 37.0
C01p23210 Brassica napus HOM05D000905 ORTHO05D000749 1.7e-43 181.0 478 36.8
BolC1t02254H Brassica oleracea HOM05D000905 ORTHO05D000749 1.7e-43 181.0 478 36.8
CARHR234710 Cardamine hirsuta HOM05D000905 ORTHO05D000749 2.2e-43 180.6 462 38.5
Nitab4.5_0001393g0200 Nicotiana tabacum HOM05D000905 ORTHO05D000749 3.8e-43 179.9 446 36.8
Os07g0520400 Oryza sativa ssp. japonica HOM05D000905 ORTHO05D000749 6.4e-43 179.1 487 34.1
HanXRQChr11g0336261 Helianthus annuus HOM05D000905 ORTHO05D000749 8.4e-43 178.7 449 37.9
AL7G25740 Arabidopsis lyrata HOM05D000905 ORTHO05D000749 1.1e-42 178.3 461 37.1
AT4G27060 Arabidopsis thaliana HOM05D000905 ORTHO05D000749 2.4e-42 177.2 461 37.1
Carub.0001s3984 Capsella rubella HOM05D000905 ORTHO05D000749 2.4e-42 177.2 457 34.6
THA.LOC104817878 Tarenaya hassleriana HOM05D000905 ORTHO05D000749 5.4e-42 176.0 469 36.2
ECA236G3325 Erigeron canadensis HOM05D000905 ORTHO05D000749 7.1e-42 175.6 448 37.1
MBI02_g28335_MAGBIO Magnolia biondii HOM05D000905 ORTHO05D000749 9.3e-42 175.3 521 34.7
Zm00001eb322820 Zea mays HOM05D000905 ORTHO05D000749 1.2e-41 174.9 499 33.3
AT1G50890 Arabidopsis thaliana HOM05D000905 ORTHO05D000749 2.7e-41 173.7 444 36.0
Carub.0007s1379 Capsella rubella HOM05D000905 ORTHO05D000749 4.6e-41 172.9 465 37.0
Hund02096 Selenicereus undatus HOM05D000905 ORTHO05D000749 6.0e-41 172.6 479 35.7
CARHR040930 Cardamine hirsuta HOM05D000905 ORTHO05D000749 1.0e-40 171.8 437 35.5
Zm00001eb106100 Zea mays HOM05D000905 ORTHO05D000749 6.6e-40 169.1 500 32.4
Ah.04g165690 Amaranthus hybridus HOM05D000905 ORTHO05D000749 3.6e-38 163.3 407 35.6
AL1G58620 Arabidopsis lyrata HOM05D000905 ORTHO05D000749 6.2e-38 162.5 452 35.2
Aa31LG5G10340 Aethionema arabicum HOM05D000905 ORTHO05D000749 1.4e-37 161.4 477 36.3
Lsat_1_v5_gn_7_109061 Lactuca sativa HOM05D000905 ORTHO05D000749 4.0e-37 159.8 434 36.4
Sp1g37630 Schrenkiella parvula HOM05D000905 ORTHO05D000749 9.0e-37 158.7 456 34.6
CDE05G2004 Ceratophyllum demersum HOM05D000905 ORTHO05D000749 1.5e-36 157.9 467 33.8
ECA246G4761 Erigeron canadensis HOM05D000905 ORTHO05D000749 1.5e-36 157.9 438 36.1
C05p33240 Brassica napus HOM05D000905 ORTHO05D000749 2.6e-36 157.1 437 36.6
Thhalv10011243m.g Eutrema salsugineum HOM05D000905 ORTHO05D000749 5.8e-36 156.0 450 34.7
BcaC05g27389 Brassica carinata HOM05D000905 ORTHO05D000749 9.9e-36 155.2 435 35.4
BcaB02g11191 Brassica carinata HOM05D000905 ORTHO05D000749 1.9e-34 151.0 435 34.3
PSO541G6243 Papaver somniferum HOM05D000905 ORTHO05D000749 3.2e-34 150.2 501 32.5
Lsat_1_v5_gn_5_5161 Lactuca sativa HOM05D000905 ORTHO05D000749 5.5e-34 149.4 403 37.0
CDE05G2062 Ceratophyllum demersum HOM05D000905 ORTHO05D000749 7.1e-34 149.1 465 32.3
PSO675G6898 Papaver somniferum HOM05D000905 ORTHO05D000749 7.9e-33 145.6 501 32.5
SEGI_21255 Sequoiadendron giganteum HOM05D000905 ORTHO05D000749 2.3e-32 144.1 513 31.8
HanXRQChr08g0233981 Helianthus annuus HOM05D000905 ORTHO05D000749 4.0e-29 133.3 406 33.7
Gohir.A12G157450 Gossypium hirsutum HOM05D000905 ORTHO05D000749 6.9e-29 132.5 181 49.7
CDE12G0665 Ceratophyllum demersum HOM05D000905 ORTHO05D000749 7.6e-28 129.0 225 43.1
HanXRQChr08g0217991 Helianthus annuus HOM05D000905 ORTHO05D000749 1.3e-27 128.3 302 39.1
Aa31LG10G3310 Aethionema arabicum HOM05D000905 ORTHO05D000749 1.1e-26 125.2 210 42.4
A05p19900 Brassica napus HOM05D000905 ORTHO05D000749 2.5e-26 124.0 408 32.6
BraA05t20895Z Brassica rapa HOM05D000905 ORTHO05D000749 2.5e-26 124.0 408 32.6
BolC5t32049H Brassica oleracea HOM05D000905 ORTHO05D000749 1.6e-25 121.3 437 32.7
TAR627G0121 Trochodendron aralioides HOM05D000905 ORTHO05D000749 3.0e-24 117.1 323 34.1
SHI31840 Sapria himalayana HOM05D000905 ORTHO05D000749 1.9e-23 114.4 268 37.7
HPP92_017606 Vanilla planifolia HOM05D000905 ORTHO05D000749 4.8e-22 109.8 215 36.3
HPP92_008709 Vanilla planifolia HOM05D000905 ORTHO05D000749 3.8e-19 100.1 320 32.5
Oeu032449.1 Olea europaea HOM05D000905 ORTHO05D000749 6.1e-17 92.8 171 40.9
Oeu042921.1 Olea europaea HOM05D000905 ORTHO05D000749 2.3e-16 90.9 252 34.5
CDE02G4794 Ceratophyllum demersum HOM05D000905 ORTHO05D000749 5.3e-13 79.7 128 47.7
unitig_578.g16765 Utricularia gibba HOM05D000905 ORTHO05D000749 5.3e-13 79.7 235 31.5
SMO139G0049 Selaginella moellendorffii HOM05D000905 ORTHO05D000749 6.9e-13 79.3 467 26.1
HanXRQChr08g0218001 Helianthus annuus HOM05D000905 ORTHO05D000749 2.2e-11 74.3 80 51.2
Actinidia10722 Actinidia chinensis HOM05D000905 ORTHO05D000749 9.4e-10 68.9 102 46.1
Gohir.A06G077950 Gossypium hirsutum HOM05D000905 ORTHO05D000749 7.9e-09 65.9 52 69.2
Mapoly0121s0024 Marchantia polymorpha HOM05D000905 ORTHO05D000749 3.0e-08 63.9 313 27.2
SMO147G0001 Selaginella moellendorffii HOM05D000905 ORTHO05D000749 1.5e-07 61.6 421 25.4
AagrBONN_evm.TU.Sc2ySwM_344.4813 Anthoceros agrestis HOM05D000905 ORTHO05D000749 2.0e-07 61.2 257 27.2
AL2G16920 Arabidopsis lyrata HOM05D000905 ORTHO05D000749 2.0e-07 61.2 288 25.7
Pp3c8_14290 Physcomitrium patens HOM05D000905 ORTHO05D000749 4.3e-07 60.1 179 32.4
CDE12G0721 Ceratophyllum demersum HOM05D000905 ORTHO05D000749 7.4e-07 59.3 164 34.1
SEGI_18148 Sequoiadendron giganteum HOM05D000905 ORTHO05D000749 9.7e-07 58.9 385 23.6
Pp3c20_6790 Physcomitrium patens HOM05D000905 ORTHO05D000749 3.7e-06 57.0 228 32.0
CSS0006401 Camellia sinensis var. sinensis HOM05D005214 ORTHO05D005861 4.8e-06 56.6 133 36.1
Nitab4.5_0001030g0120 Nicotiana tabacum HOM05D000905 ORTHO05D000749 8.2e-06 55.8 315 27.6


User provided reference genes

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