Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 6.0e-74 280.8 145 100.0
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.4e-43 179.1 141 68.8
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 2.4e-43 179.1 136 68.4
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 2.7e-42 175.6 148 65.5
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 1.0e-41 173.7 139 66.9
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 2.3e-41 172.6 139 66.9
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 5.1e-41 171.4 143 66.4
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 1.1e-40 170.2 135 65.9
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.9e-40 169.5 150 64.7
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 5.6e-40 167.9 140 63.6
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.6e-39 166.4 140 62.9
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 6.2e-39 164.5 135 65.2
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 3.1e-38 162.2 136 64.7
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 6.9e-38 161.0 142 62.0
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 9.0e-38 160.6 136 64.0
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 2.0e-37 159.5 136 63.2
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.6e-37 159.1 136 62.5
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 4.5e-37 158.3 137 63.5
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 5.8e-37 157.9 142 62.0
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 7.6e-37 157.5 138 60.9
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 7.6e-37 157.5 136 63.2
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 9.9e-37 157.1 137 62.8
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 1.7e-36 156.4 137 60.6
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 2.2e-36 156.0 136 60.3
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.4e-35 152.5 139 62.6
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 3.2e-35 152.1 136 60.3
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 4.2e-35 151.8 143 61.5
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 4.2e-35 151.8 138 63.8
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 4.2e-35 151.8 141 61.7
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 5.4e-35 151.4 137 59.1
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 5.4e-35 151.4 137 60.6
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 9.3e-35 150.6 144 58.3
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 9.3e-35 150.6 136 61.0
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 1.2e-34 150.2 142 59.9
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 1.2e-34 150.2 139 57.6
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 1.2e-34 150.2 136 60.3
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 1.2e-34 150.2 141 61.7
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.1e-34 149.4 137 58.4
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.1e-34 149.4 137 59.1
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 2.7e-34 149.1 138 58.7
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 6.0e-34 147.9 137 60.6
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 7.9e-34 147.5 139 56.8
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.0e-33 147.1 133 60.2
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.0e-33 147.1 136 61.0
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.3e-33 146.7 143 58.7
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.3e-33 146.7 136 57.4
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 1.8e-33 146.4 145 57.9
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 1.8e-33 146.4 145 57.9
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 1.8e-33 146.4 147 57.1
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.3e-33 146.0 136 61.0
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.0e-33 145.6 154 55.2
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 3.0e-33 145.6 130 61.5
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 8.7e-33 144.1 144 59.7
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 8.7e-33 144.1 136 59.6
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 1.5e-32 143.3 144 54.9
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 1.5e-32 143.3 144 54.9
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 1.5e-32 143.3 148 55.4
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 1.9e-32 142.9 138 58.7
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 2.5e-32 142.5 136 55.1
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 4.3e-32 141.7 145 54.5
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 7.4e-32 141.0 148 56.1
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 9.6e-32 140.6 140 58.6
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 9.6e-32 140.6 140 60.7
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 9.6e-32 140.6 174 48.9
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 1.3e-31 140.2 141 60.3
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.3e-31 140.2 136 54.4
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.1e-31 139.4 130 60.8
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.8e-31 139.0 90 71.1
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.8e-31 139.0 130 60.8
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 4.8e-31 138.3 140 60.0
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 4.8e-31 138.3 140 60.0
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 4.8e-31 138.3 141 59.6
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 6.2e-31 137.9 137 57.7
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 6.2e-31 137.9 133 57.1
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 8.1e-31 137.5 130 60.8
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 3.1e-30 135.6 139 56.1
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 4.0e-30 135.2 130 55.4
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 4.0e-30 135.2 136 55.1
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 4.0e-30 135.2 136 55.1
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 5.3e-30 134.8 130 56.2
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 9.0e-30 134.0 148 53.4
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 1.2e-29 133.7 137 55.5
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.0e-29 132.9 139 54.7
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 2.6e-29 132.5 136 51.5
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 4.5e-29 131.7 137 53.3
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 4.5e-29 131.7 196 43.4
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 9.9e-29 130.6 136 50.7
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 2.2e-28 129.4 136 53.7
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.9e-28 129.0 136 52.9
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 2.9e-28 129.0 121 57.9
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 2.9e-28 129.0 148 50.7
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 6.4e-28 127.9 82 69.5
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 8.4e-28 127.5 136 53.7
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.1e-27 127.1 142 50.7
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 2.4e-27 125.9 136 52.9
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 2.4e-27 125.9 140 54.3
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 3.2e-27 125.6 136 54.4
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 4.2e-27 125.2 137 51.1
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 5.5e-27 124.8 138 52.2
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 9.3e-27 124.0 136 52.2
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.2e-26 123.6 142 51.4
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 2.1e-26 122.9 136 53.7
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 2.1e-26 122.9 131 54.2
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 2.7e-26 122.5 136 52.9
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 4.6e-26 121.7 110 56.4
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 3.9e-25 118.6 136 54.4
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 5.1e-25 118.2 137 49.6
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 5.1e-25 118.2 143 47.6
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.1e-24 117.1 137 51.1
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.9e-24 116.3 131 51.9
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.9e-24 116.3 131 51.9
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 4.3e-24 115.2 84 63.1
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 5.6e-24 114.8 84 64.3
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 7.4e-24 114.4 133 51.9
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 9.6e-24 114.0 132 52.3
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.8e-23 112.5 134 50.7
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 8.2e-23 110.9 136 50.0
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.4e-22 110.2 81 65.4
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 1.8e-22 109.8 72 69.4
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.8e-22 109.8 72 69.4
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 3.1e-22 109.0 127 50.4
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.4e-21 105.5 144 41.7
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 3.4e-21 105.5 146 50.7
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.1e-19 100.5 133 45.1
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 3.2e-19 99.0 132 45.5
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 2.7e-18 95.9 132 42.4
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.9e-18 94.4 130 43.1
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.9e-18 94.4 130 43.1
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.1e-16 90.5 103 44.7
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.3e-16 89.0 128 39.8
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 5.7e-16 88.2 145 45.5
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 4.8e-15 85.1 56 76.8
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.3e-15 84.7 90 45.6
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 2.4e-14 82.8 86 46.5
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 9.0e-14 80.9 100 49.0
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 1.2e-13 80.5 54 74.1
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.0e-12 77.4 140 35.0
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 2.9e-12 75.9 145 40.0
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.9e-11 73.2 113 42.5
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.1e-10 68.2 88 45.5
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 9.7e-08 60.8 39 64.1
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 1.3e-07 60.5 51 51.0
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 4.8e-07 58.5 59 55.9
Ca_12765_v3 Cicer arietinum L. HOM05D002706 ORTHO05D003253 8.2e-07 57.8 50 72.0
arahy.Tifrunner.gnm1.ann1.E99XLH Arachis hypogaea HOM05D002152 ORTHO05D031610 9.1e-06 54.3 37 62.2


User provided reference genes

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